Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30526
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35833| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_11346| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_52425| Best HMM Match : Arm (HMM E-Value=9.7e-28)                   30   2.0  
SB_50536| Best HMM Match : Mycobact_memb (HMM E-Value=5.3)             29   4.7  
SB_11585| Best HMM Match : TPR_MLP1_2 (HMM E-Value=2.2)                28   6.2  
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_35833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1032

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 552 VPPAAALVHWQGLRPGXMGSVGGLWSGARQQTSMYDEHGPL 430
           +P  A L+H Q L    + +VG + +G  +QT +   HG L
Sbjct: 848 LPALALLIHHQDLDTAALRAVGNIVTGTDEQTQVVLNHGAL 888


>SB_11346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1706

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 191  SRSLIRSSHQRXPDAIAAGHAASVADRAPSTLVPGVSTNDDLSCQTSDG 337
            S+S+ ++   +  D + AGH  S++ + P+T VP       LS   + G
Sbjct: 983  SQSVAQNQANQAEDGVKAGHKTSLSCQGPATFVPVTQAIQQLSPSPTHG 1031


>SB_52425| Best HMM Match : Arm (HMM E-Value=9.7e-28)
          Length = 234

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -2

Query: 552 VPPAAALVHWQGLRPGXMGSVGGLWSGARQQTSMYDEHGPLPTLI 418
           +P  A L+H Q L    + +VG + +G  +QT    + G +P +I
Sbjct: 185 LPALALLIHHQDLDTAALRAVGNIVTGTDEQTQEVIDAGLIPLII 229


>SB_50536| Best HMM Match : Mycobact_memb (HMM E-Value=5.3)
          Length = 462

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +2

Query: 449 YIDVCCLAPDQRPP--TDPIXPGRR 517
           Y+DVCCL  D+ P   TDP   G R
Sbjct: 315 YLDVCCLRQDEFPANITDPQIEGHR 339


>SB_11585| Best HMM Match : TPR_MLP1_2 (HMM E-Value=2.2)
          Length = 610

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +3

Query: 435 ARVHRTSTSAVWLPTRDRQQIPSXPAGDPANEPGLRLAEP*RRCLPDH 578
           A VH+ +T    L  + RQ++PS  AG  +N+   RL +P RR  P +
Sbjct: 537 ATVHQYNTHGKGLTIQRRQRVPSELAGSDSNQSTPRL-KP-RRAQPQN 582


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = +1

Query: 544  WRNPDG---VAFRTTGDVDGEXKFGEFPWMVAILKVEPVDDNEP 666
            WR  +G   VA  T GD+  E +    PW+V   +    D NEP
Sbjct: 4088 WRFNEGEGAVAIDTVGDI--EMELASSPWLVPSWEFSDADMNEP 4129


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,038,928
Number of Sequences: 59808
Number of extensions: 389040
Number of successful extensions: 1022
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)