Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30526
(691 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g09000.1 68416.m01053 proline-rich family protein 33 0.24
At1g75620.1 68414.m08786 glyoxal oxidase-related contains simila... 32 0.41
At1g19900.1 68414.m02495 glyoxal oxidase-related contains simila... 31 0.54
At5g19340.1 68418.m02305 expressed protein 30 1.7
At5g47460.1 68418.m05861 pentatricopeptide (PPR) repeat-containi... 29 3.8
At3g54320.1 68416.m06003 ovule development protein, putative sim... 28 5.1
At3g04060.1 68416.m00428 no apical meristem (NAM) family protein... 28 5.1
At1g68150.1 68414.m07785 WRKY family transcription factor simila... 28 5.1
At5g42560.1 68418.m05180 abscisic acid-responsive HVA22 family p... 27 8.9
At4g19830.1 68417.m02907 immunophilin / FKBP-type peptidyl-proly... 27 8.9
At5g45640.1 68418.m05612 subtilase family protein contains Pfam ... 25 9.4
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 32.7 bits (71), Expect = 0.24
Identities = 22/74 (29%), Positives = 35/74 (47%)
Frame = +3
Query: 240 QPVTQLVSLTGLHRPWCLASLRTMTFRARPPTAKKGSASTITCATRPITP*SLTEQTSSI 419
+P T S+ GL RP S R+ + RP T + S + T +RP+T + ++S+
Sbjct: 133 KPQTSSSSVAGLRRPSSSGSSRSTS---RPATPTRRSTTPTTSTSRPVTTRASNSRSSTP 189
Query: 420 *ESAVARVHRTSTS 461
A R +TS
Sbjct: 190 TSRATLTAARATTS 203
>At1g75620.1 68414.m08786 glyoxal oxidase-related contains
similarity to glyoxal oxidase precursor [Phanerochaete
chrysosporium] gi|1050302|gb|AAA87594
Length = 547
Score = 31.9 bits (69), Expect = 0.41
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 508 RPETLPMNQGC--GWRNPDGVAFRTTGDVDGEXK 603
RP T+ N C G PDG +T GD+DGE K
Sbjct: 107 RPLTVQSNTWCSSGGVTPDGTLLQTGGDLDGERK 140
>At1g19900.1 68414.m02495 glyoxal oxidase-related contains
similarity to glyoxal oxidase precursor [Phanerochaete
chrysosporium] gi|1050302|gb|AAA87594
Length = 548
Score = 31.5 bits (68), Expect = 0.54
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +1
Query: 508 RPETLPMNQGC--GWRNPDGVAFRTTGDVDGEXKFGEF 615
RP T+ N C G PDGV +T GD DGE K F
Sbjct: 103 RPLTVQSNTWCSSGSVRPDGVLVQTGGDRDGELKTRTF 140
>At5g19340.1 68418.m02305 expressed protein
Length = 263
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 236 IAAGHAASVADRAPSTLVPGVSTNDDLSCQTSDGXEGECVN 358
+ + A++A+ PST P +S + DLS SDG + C+N
Sbjct: 1 MVSAETATMAEAEPSTTGPRISFSADLSSSDSDG-DFICIN 40
>At5g47460.1 68418.m05861 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 576
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 508 GXDGICWRSLVGSQTADVDVR*TRATADSYID 413
G DG+ WR+L+G+ +A D++ + A I+
Sbjct: 488 GYDGVAWRALLGACSARKDLKAAKTVAAKMIE 519
>At3g54320.1 68416.m06003 ovule development protein, putative
similar to ovule development protein aintegumenta
(GI:1209099) [Arabidopsis thaliana]
Length = 427
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +3
Query: 342 KGSASTITCATRPITP*SLTEQTSSI*ESAVARVHRTSTSAVWLPTRDRQQIPSXPA 512
K +T TC++ P + S + TSS +S R R + P+ D+ P+ PA
Sbjct: 2 KKRLTTSTCSSSPSSSVSSSTTTSSPIQSEAPRPKRAKRAKKSSPSGDKSHNPTSPA 58
>At3g04060.1 68416.m00428 no apical meristem (NAM) family protein
contains Pfam PF02365 : No apical meristem (NAM)
protein; similar to cup-shaped cotyledon CUC2
(GI:1944132) [Arabidopsis thaliana]
Length = 338
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 510 PGXMGSVGGLWSGARQQTSMYDE-HGPLPTLISMTFVPS 397
PG +G G +SGARQQ + H P + T++P+
Sbjct: 208 PGFLGQPGPSFSGARQQHDLKPVLHHPTTAPVDNTYLPT 246
>At1g68150.1 68414.m07785 WRKY family transcription factor similar
to DNA-binding protein ABF2 GI:1159879 from [Avena
fatua]
Length = 374
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 457 RLLSGSRPETANR-SHXARPETLPMNQGCGWR 549
R++S S+ R S AR ET MN GC WR
Sbjct: 210 RIISSSQGNRKARVSVRARCETATMNDGCQWR 241
>At5g42560.1 68418.m05180 abscisic acid-responsive HVA22 family
protein weak similarity to SP|Q00765 Polyposis locus
protein 1 (TB2 protein) {Homo sapiens}; contains Pfam
profile PF03134: TB2/DP1, HVA22 family
Length = 296
Score = 27.5 bits (58), Expect = 8.9
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Frame = +3
Query: 312 TFRARPPTAKKGSASTITCATRPI-TP*SLTEQ---TSSI*ESAVARVHRTSTSAVWLPT 479
T R +PP + G A+ + P S E+ +SS S+ T V P+
Sbjct: 147 TPRPQPPQKRGGRANQAPAKPKKAPVPQSEPEEVSLSSSSSSSSSENEGNEPTRKVSGPS 206
Query: 480 RDRQQIPSXPAGDPANEPGLRLAE 551
R R + S PA DP N ++A+
Sbjct: 207 RPRPTVTSVPAADPKNAGTTQIAQ 230
>At4g19830.1 68417.m02907 immunophilin / FKBP-type peptidyl-prolyl
cis-trans isomerase family protein similar to 70 kDa
peptidylprolyl isomerase (Peptidylprolyl cis-trans
isomerase) (PPiase) (Rotamase) (SP:Q43207) [Triticum
aestivum]; FKBP-type peptidyl-prolyl cis-trans
isomerase,Synechocystis sp., PIR2:S75144; contains Pfam
PF00254: peptidyl-prolyl cis-trans isomerase, FKBP-type
Length = 229
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 297 SLRTMTFRARPPTAKKGSASTITCATRPITP*SLTEQTSSI 419
SLR R+ P++ S+ST+ A+R S+ TSS+
Sbjct: 26 SLRIFASRSSAPSSSSSSSSTVAAASRRSISLSIIAVTSSV 66
>At5g45640.1 68418.m05612 subtilase family protein contains Pfam
domain, PF00082: Subtilase family; contains Pfam domain,
PF02225: protease associated (PA) domain
Length = 754
Score = 24.6 bits (51), Expect(2) = 9.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 374 AANNTIITDGTNVIDIRVGSGPCSSYID 457
AA + I DG NVI I +G+ +Y++
Sbjct: 262 AAFDDAIADGVNVISISIGTVEPHTYLE 289
Score = 21.0 bits (42), Expect(2) = 9.4
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +2
Query: 239 AAGHAASVADRAPSTLVPGVSTNDDLSCQTSDG 337
A GH + A A V GVS ++ T+ G
Sbjct: 196 ADGHGSHTASTAVGRRVDGVSALGGIAMGTASG 228
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,533,166
Number of Sequences: 28952
Number of extensions: 255519
Number of successful extensions: 676
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -