Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30524
(672 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 161 6e-40
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 155 2e-38
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 153 1e-37
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 128 4e-30
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 1e-20
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 85 4e-17
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 83 3e-16
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 3e-13
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 2e-10
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 60 2e-09
SB_47390| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 3e-08
SB_24074| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_29289| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.84
SB_41892| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_8849| Best HMM Match : F-box (HMM E-Value=0.86) 30 2.0
SB_28120| Best HMM Match : ScdA_N (HMM E-Value=6.5) 29 2.6
SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85) 29 2.6
SB_17403| Best HMM Match : I-set (HMM E-Value=0) 29 4.5
SB_38784| Best HMM Match : Apo-VLDL-II (HMM E-Value=8.3) 28 6.0
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_55740| Best HMM Match : C1_1 (HMM E-Value=3.6) 28 6.0
SB_36932| Best HMM Match : HTH_8 (HMM E-Value=1.4) 28 7.9
SB_25720| Best HMM Match : Enterotoxin_HS (HMM E-Value=1.9) 28 7.9
SB_46921| Best HMM Match : Endomucin (HMM E-Value=6.3) 28 7.9
SB_8228| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 161 bits (390), Expect = 6e-40
Identities = 74/84 (88%), Positives = 82/84 (97%)
Frame = +3
Query: 3 GTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRR 182
GTFDVS+LTIEDGIFEVKSTAGDTHLGGEDFDN+MV+HFV++FK+KYKKD+ NKRA+RR
Sbjct: 203 GTFDVSVLTIEDGIFEVKSTAGDTHLGGEDFDNKMVDHFVKQFKQKYKKDITPNKRAMRR 262
Query: 183 LRTACERAKRTLSSSTQASIEIDS 254
LRTACERAKRTLSSSTQASIEIDS
Sbjct: 263 LRTACERAKRTLSSSTQASIEIDS 286
Score = 141 bits (342), Expect = 4e-34
Identities = 67/86 (77%), Positives = 76/86 (88%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 FEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMD--KAQIHDIVLVGGSTRIPK 430
FEGIDFYTSITRARFEELN DLF+ T EPVE+++RD+K+ K IHDIVLVGGSTRIPK
Sbjct: 288 FEGIDFYTSITRARFEELNQDLFKKTTEPVEQAIRDSKIPGGKESIHDIVLVGGSTRIPK 347
Query: 431 VQKLLQDFFNGKELNKSINPDEAVAY 508
+QK+LQ+ F GKELNKSINPDEAVAY
Sbjct: 348 IQKMLQELFGGKELNKSINPDEAVAY 373
Score = 72.9 bits (171), Expect = 2e-13
Identities = 36/54 (66%), Positives = 40/54 (74%)
Frame = +1
Query: 511 AAVQAAILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNTTIPTKQTQ 672
AAVQAAILHGDK + V+D GIETAGGVM+ LIKRN+TIPTKQTQ
Sbjct: 375 AAVQAAILHGDKDDTVKDLLLLDVAPLSMGIETAGGVMSVLIKRNSTIPTKQTQ 428
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 155 bits (377), Expect = 2e-38
Identities = 73/85 (85%), Positives = 81/85 (95%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 GTFDVSILTIEDG-IFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALR 179
GTFDVSILTI+DG +FEVKSTAGDTHLGGEDFDNR+VNHFV EFKRKYKKD++ N RA+R
Sbjct: 203 GTFDVSILTIDDGSLFEVKSTAGDTHLGGEDFDNRLVNHFVAEFKRKYKKDMSKNSRAMR 262
Query: 180 RLRTACERAKRTLSSSTQASIEIDS 254
RLRTACERAKRTLSSST+ASIE+DS
Sbjct: 263 RLRTACERAKRTLSSSTEASIEVDS 287
Score = 133 bits (321), Expect = 1e-31
Identities = 58/84 (69%), Positives = 74/84 (88%)
Frame = +2
Query: 257 FEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQ 436
FEGIDFYT I+RARFE+L +DLF S ++PV K+L DAK K+ IH++VLVGGSTR+PK+Q
Sbjct: 289 FEGIDFYTKISRARFEDLCSDLFLSCLDPVNKALSDAKFSKSDIHEVVLVGGSTRVPKIQ 348
Query: 437 KLLQDFFNGKELNKSINPDEAVAY 508
K+L+++F+GK LNKSINPDEAVAY
Sbjct: 349 KMLEEYFSGKSLNKSINPDEAVAY 372
Score = 64.5 bits (150), Expect = 7e-11
Identities = 34/54 (62%), Positives = 37/54 (68%)
Frame = +1
Query: 511 AAVQAAILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNTTIPTKQTQ 672
AAVQAAIL GDKS+EV+D GIETAG VMT LI+RN IPTK TQ
Sbjct: 374 AAVQAAILSGDKSDEVKDVLLVDVAPLSLGIETAGEVMTKLIERNARIPTKATQ 427
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 153 bits (371), Expect = 1e-37
Identities = 72/84 (85%), Positives = 79/84 (94%)
Frame = +3
Query: 3 GTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRR 182
GTFDVS+L+IEDGIFEVKST GDTHLGGEDFDN MV+ FV++FK+KYKKD+ NKRALRR
Sbjct: 296 GTFDVSVLSIEDGIFEVKSTHGDTHLGGEDFDNNMVDFFVKQFKQKYKKDITPNKRALRR 355
Query: 183 LRTACERAKRTLSSSTQASIEIDS 254
LRTACERAKRTLSSSTQASIEIDS
Sbjct: 356 LRTACERAKRTLSSSTQASIEIDS 379
Score = 139 bits (336), Expect = 2e-33
Identities = 63/85 (74%), Positives = 79/85 (92%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 FEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMD-KAQIHDIVLVGGSTRIPKV 433
++GIDFYTSITRARFEE+NA LF+ T+EPVEK+++D+K++ K +I +IV+VGGSTRIPK+
Sbjct: 381 YDGIDFYTSITRARFEEMNAHLFKKTLEPVEKAIKDSKLESKEKIDEIVMVGGSTRIPKI 440
Query: 434 QKLLQDFFNGKELNKSINPDEAVAY 508
Q LLQ+FFNGKELNKSINPDEAVAY
Sbjct: 441 QSLLQNFFNGKELNKSINPDEAVAY 465
Score = 76.2 bits (179), Expect = 2e-14
Identities = 38/54 (70%), Positives = 39/54 (72%)
Frame = +1
Query: 511 AAVQAAILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNTTIPTKQTQ 672
AAVQAAILHGDKSE QD G+ETAGGVMT IKRNTTIPTKQTQ
Sbjct: 467 AAVQAAILHGDKSEATQDLLLLDVAPLTLGLETAGGVMTAAIKRNTTIPTKQTQ 520
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 128 bits (309), Expect = 4e-30
Identities = 59/85 (69%), Positives = 73/85 (85%)
Frame = +2
Query: 254 FFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKV 433
FFEG DF +TRARFEELNA LF+ST++PV+K L DA + K++IH+IVLVGGSTRIPKV
Sbjct: 984 FFEGEDFSEMLTRARFEELNAKLFKSTLKPVQKVLEDADLKKSEIHEIVLVGGSTRIPKV 1043
Query: 434 QKLLQDFFNGKELNKSINPDEAVAY 508
Q+L++DFF GKE ++ INPDEAVAY
Sbjct: 1044 QQLVKDFFEGKEPSRGINPDEAVAY 1068
Score = 103 bits (247), Expect = 1e-22
Identities = 45/84 (53%), Positives = 66/84 (78%)
Frame = +3
Query: 3 GTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRR 182
GTFDVS+LTI++G+FEV +T GDTHLGGEDFD ++ HF++ +K+K K++ + RA+++
Sbjct: 900 GTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQNVMEHFIKLYKKKKGKNIRKDNRAVQK 959
Query: 183 LRTACERAKRTLSSSTQASIEIDS 254
LR E+AKR LS+ QA +EI+S
Sbjct: 960 LRREVEKAKRALSTQHQARVEIES 983
Score = 50.0 bits (114), Expect = 2e-06
Identities = 27/54 (50%), Positives = 33/54 (61%)
Frame = +1
Query: 511 AAVQAAILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNTTIPTKQTQ 672
AAVQA +L G+ E+ + GIET GGVMT LI RNT IPTK++Q
Sbjct: 1070 AAVQAGVLGGE--EDTGEVVLLDVNPLTLGIETVGGVMTKLISRNTVIPTKKSQ 1121
>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 97.1 bits (231), Expect = 1e-20
Identities = 49/102 (48%), Positives = 67/102 (65%)
Frame = +3
Query: 3 GTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRR 182
GTFD+SIL I+ G+FEVK+T GDT+LGGEDFDN ++ + EFK++ DL+ + AL+R
Sbjct: 10 GTFDISILEIQKGVFEVKATNGDTYLGGEDFDNTLLKFLIAEFKKESGVDLSKDSMALQR 69
Query: 183 LRTACERAKRTLSSSTQASIEIDSSLRVLTSTRQLLVLASRS 308
LR A E+AK LSSS Q I + + + L + SRS
Sbjct: 70 LREAAEKAKIELSSSVQTDINLPYITVDASGPKHLNMKLSRS 111
Score = 82.6 bits (195), Expect = 3e-16
Identities = 38/74 (51%), Positives = 58/74 (78%)
Frame = +2
Query: 284 ITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNG 463
++R++FE L ADL T+ P +K L+DA+++K +I D++LVGG TR+PKVQ+ +QD F G
Sbjct: 108 LSRSKFESLVADLINRTVGPCKKCLQDAEINKGEIGDVLLVGGMTRMPKVQQTVQDIF-G 166
Query: 464 KELNKSINPDEAVA 505
+ +K++NPDEAVA
Sbjct: 167 RVPSKAVNPDEAVA 180
Score = 48.8 bits (111), Expect = 4e-06
Identities = 27/54 (50%), Positives = 32/54 (59%)
Frame = +1
Query: 511 AAVQAAILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNTTIPTKQTQ 672
AA+Q +L GD V+D GIET GGV T LI RNTTIPTK++Q
Sbjct: 183 AAIQGGVLAGD----VKDVLLLDVTPLSLGIETLGGVFTKLITRNTTIPTKKSQ 232
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 85.4 bits (202), Expect = 4e-17
Identities = 34/80 (42%), Positives = 60/80 (75%)
Frame = +2
Query: 266 IDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLL 445
+ F +I+R FE +N DLF+ ++P+ + L + ++ K ++ ++VLVGGSTR+PK+++L+
Sbjct: 324 VKFKETISRKMFETINEDLFKKVLQPIRRVLAEVELPKEEVDEVVLVGGSTRVPKIRQLI 383
Query: 446 QDFFNGKELNKSINPDEAVA 505
Q+FF+GK N +I+P+ AVA
Sbjct: 384 QEFFDGKPPNVAIDPELAVA 403
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/82 (34%), Positives = 50/82 (60%)
Frame = +3
Query: 3 GTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRR 182
GT DVS+L I+ G+F + AG+ LGG+DF+ R + + +Q +++ + L T ++R
Sbjct: 232 GTLDVSLLNIQGGMFVTMAMAGNNRLGGQDFNARFMQYLLQLIHKRFNRQL-TCSEDIQR 290
Query: 183 LRTACERAKRTLSSSTQASIEI 248
LR E AK L+ + + +I++
Sbjct: 291 LRQEVEAAKINLTRTNEVTIKL 312
>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
Length = 212
Score = 82.6 bits (195), Expect = 3e-16
Identities = 38/74 (51%), Positives = 58/74 (78%)
Frame = +2
Query: 284 ITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNG 463
++R++FE L ADL T+ P +K L+DA+++K +I D++LVGG TR+PKVQ+ +QD F G
Sbjct: 53 LSRSKFESLVADLINRTVGPCKKCLQDAEINKGEIGDVLLVGGMTRMPKVQQTVQDIF-G 111
Query: 464 KELNKSINPDEAVA 505
+ +K++NPDEAVA
Sbjct: 112 RVPSKAVNPDEAVA 125
Score = 48.8 bits (111), Expect = 4e-06
Identities = 27/54 (50%), Positives = 32/54 (59%)
Frame = +1
Query: 511 AAVQAAILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNTTIPTKQTQ 672
AA+Q +L GD V+D GIET GGV T LI RNTTIPTK++Q
Sbjct: 128 AAIQGGVLAGD----VKDVLLLDVTPLSLGIETLGGVFTKLITRNTTIPTKKSQ 177
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 72.5 bits (170), Expect = 3e-13
Identities = 39/90 (43%), Positives = 49/90 (54%)
Frame = +2
Query: 257 FEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQ 436
F+G DF +TR EE+ DLF PV ++L+ A M I +VLVGG R+PKVQ
Sbjct: 272 FDGKDFRVKVTREELEEMCQDLFDRVAGPVNRALKSASMTMNDIDSVVLVGGGIRVPKVQ 331
Query: 437 KLLQDFFNGKELNKSINPDEAVAYVQLSRL 526
L EL K+IN DEA A +RL
Sbjct: 332 DALLRAVKKPELAKNINADEAAALGMPARL 361
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = +3
Query: 51 VKSTAGDTHLGGEDFDNRMVNHFVQEFKR--KYKKDLATNKRALRRLRTACERAKRTLSS 224
+K D LGG D R+ +H VQ FK+ K+K ++ + RA+ + R K+ LS+
Sbjct: 201 IKGIGFDRTLGGHAIDMRLRDHLVQLFKKNYKFKGEVTQSSRAMAKFYKEALRVKQVLSA 260
Query: 225 STQASIEID 251
+ + +I+
Sbjct: 261 NNEIFAQIE 269
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 62.9 bits (146), Expect = 2e-10
Identities = 31/75 (41%), Positives = 46/75 (61%)
Frame = +3
Query: 6 TFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRL 185
+ V I G +V STA + +LGG DFD +V HF QEFK KYK D+ ++ +A +L
Sbjct: 264 SLQVCITAFLKGQLKVLSTAVEPNLGGRDFDYVLVEHFAQEFKTKYKIDVHSSIKAKIKL 323
Query: 186 RTACERAKRTLSSST 230
CE+ K+ +S++T
Sbjct: 324 GAECEKLKKLMSANT 338
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 254 FFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIV 400
F E D + + RA+FEEL ADL + P+ +L A+ K + ++V
Sbjct: 348 FMEDKDVHGRMKRAQFEELAADLLKLVEAPLRSAL--AQSGKYSVKNVV 394
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 59.7 bits (138), Expect = 2e-09
Identities = 31/86 (36%), Positives = 54/86 (62%), Gaps = 5/86 (5%)
Frame = +3
Query: 12 DVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKR-----KYKKDLATNKRAL 176
DV++L++ +G+++V +T D LGG +FD +++ +FKR K+K D TNKR+
Sbjct: 167 DVTLLSVINGMYKVLATEYDGALGGRNFDEVLLDLLANDFKRQVLLWKWKIDPLTNKRSK 226
Query: 177 RRLRTACERAKRTLSSSTQASIEIDS 254
+L+T+ E+ K LS+ A+ +DS
Sbjct: 227 TKLQTSAEQCKNILSTLESANCSVDS 252
>SB_47390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 55.6 bits (128), Expect = 3e-08
Identities = 22/46 (47%), Positives = 37/46 (80%)
Frame = +2
Query: 371 MDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAY 508
+ ++ + ++LVGG+TR PK+Q+LL+++F GKE+ + I+PDE VAY
Sbjct: 35 LKQSSMIQVILVGGATRTPKIQQLLKNYFVGKEICRRISPDEVVAY 80
>SB_24074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 87
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/41 (48%), Positives = 31/41 (75%)
Frame = +2
Query: 383 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVA 505
+I + +VGGSTRIP ++ ++++ F GKEL ++N DEAVA
Sbjct: 6 EIDSVEIVGGSTRIPAIKDIIKNVF-GKELMTTMNADEAVA 45
>SB_29289| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 956
Score = 31.1 bits (67), Expect = 0.84
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 116 LCPGVQEEIQKGPRYQQESS*AFAYCM*EGK 208
LCP ++ + GP +++E AFA C+ GK
Sbjct: 169 LCPSPEQNGEPGPMFEREGGDAFANCVARGK 199
>SB_41892| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 107 GQPLCPGVQEEIQKGPRYQQESS*AFAYCM 196
G LCP ++ + GP +++E S AFA C+
Sbjct: 218 GYKLCPLPEQNGEPGPMFEREGSDAFANCV 247
>SB_8849| Best HMM Match : F-box (HMM E-Value=0.86)
Length = 1222
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/45 (33%), Positives = 29/45 (64%)
Frame = -1
Query: 654 DGSVTLDECGHDTSSSLNTEGKGCYIKQQQILHLLRLVTVQDSSL 520
DG+V LDE + +++SL++ G C + ++ + + TV++SSL
Sbjct: 1160 DGAVLLDEWNYGSNASLSSCGSTC--SESRLSYFIGQDTVEESSL 1202
>SB_28120| Best HMM Match : ScdA_N (HMM E-Value=6.5)
Length = 452
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 116 LCPGVQEEIQKGPRYQQESS*AFAYCM*EGK 208
LCP ++ GP +++E S AFA C+ GK
Sbjct: 206 LCPLPEQNGGPGPMFEREGSDAFANCVTRGK 236
>SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)
Length = 647
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 58 PPPATPTWEVRTL-TIAWSTTLSRSSRGNTKRTSLPTREL 174
PPPA T E L T +W+ T S + R KRT LPT L
Sbjct: 436 PPPAFQTDEPERLQTSSWTETASGTGREEFKRT-LPTAAL 474
>SB_17403| Best HMM Match : I-set (HMM E-Value=0)
Length = 671
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/70 (27%), Positives = 30/70 (42%)
Frame = -3
Query: 439 LLHLGDTSGATHQYNIVDLSLIHLGITERLLHWLHGRPEQIGVQLLEASTSN*RVEVNTL 260
LLH T+ + Y I L L H+G +HG ++I L S + + T+
Sbjct: 197 LLH-NATNSNNNSYTITGLRLDHVGAYRCFTKNVHGTDDKITYIYLPPSITTITPTLQTV 255
Query: 259 KEESISMLAC 230
E I+ + C
Sbjct: 256 NESDITSIYC 265
>SB_38784| Best HMM Match : Apo-VLDL-II (HMM E-Value=8.3)
Length = 439
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 116 LCPGVQEEIQKGPRYQQESS*AFAYCM 196
LCP ++ + GP +++E S AFA C+
Sbjct: 107 LCPLPEQNGEPGPMFEREGSDAFANCV 133
>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3235
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 3 GTFDVSILTIEDGIFEVKSTAGDTHLGGEDF 95
G+F VS E+GI ++ GD H+ G F
Sbjct: 1437 GSFGVSYTPFEEGIHDLAVKFGDDHIPGSPF 1467
>SB_55740| Best HMM Match : C1_1 (HMM E-Value=3.6)
Length = 533
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 116 LCPGVQEEIQKGPRYQQESS*AFAYCM 196
LCP ++ + GP +++E S AFA C+
Sbjct: 74 LCPLPEQNGEPGPMFEREGSDAFANCV 100
>SB_36932| Best HMM Match : HTH_8 (HMM E-Value=1.4)
Length = 721
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/84 (25%), Positives = 36/84 (42%)
Frame = +3
Query: 39 GIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTL 218
G ++ K T GD DF ++ HF + K ++D A +R A R + T+
Sbjct: 479 GQYKSKHTFGDLSCCLSDFGCQIDRHFFETSHAKGEQD-AAGANIKQRATLAVIRGRATI 537
Query: 219 SSSTQASIEIDSSLRVLTSTRQLL 290
S+ Q + S + T++ L
Sbjct: 538 KSAKQLHDYLSSKFTLPTTSNTSL 561
>SB_25720| Best HMM Match : Enterotoxin_HS (HMM E-Value=1.9)
Length = 706
Score = 27.9 bits (59), Expect = 7.9
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Frame = +3
Query: 102 RMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEIDSSL----RVL 269
RM ++ E + + K+ +R LRR+ E++ +S + +EI+ SL L
Sbjct: 552 RMYGTYMYE-RYLFAKEKDNFRRRLRRVTKQLEQSAELVSGTKDQIVEIEKSLNFLSNAL 610
Query: 270 TSTRQLLVLASRS*T-PICSGLP 335
+ST L SRS P+ G P
Sbjct: 611 SSTSYREALRSRSSAFPLSCGQP 633
>SB_46921| Best HMM Match : Endomucin (HMM E-Value=6.3)
Length = 312
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +1
Query: 10 STCPSLPSRMVSSR*NPPPATPTWEVRTLTIAWSTTLSRSSRGNTKRTSLPTREL 174
S CPSLP+ S TP + TI T + SS T TS PT ++
Sbjct: 46 SLCPSLPTSSTHSTSPTVQTTPAFTTSPATILPPTAKTTSS---TSSTSKPTEDV 97
>SB_8228| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/58 (22%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +2
Query: 278 TSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGG-STRIPKVQKLLQ 448
T ++ARF++ DL T++P+ ++++ D + +++ G R+ + L+Q
Sbjct: 176 TEHSKARFKQQLTDLVIHTLQPIRENIQSLSKDPGLVSNVLETGAEKARLLAEETLVQ 233
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,931,555
Number of Sequences: 59808
Number of extensions: 499795
Number of successful extensions: 4155
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 3907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4146
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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