Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30523
(811 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 146 3e-36
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 107 1e-24
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 105 7e-24
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 102 7e-23
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 98 1e-21
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 93 3e-20
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 93 6e-20
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 91 2e-19
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 84 3e-17
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 74 2e-14
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 69 8e-13
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 68 1e-12
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 68 2e-12
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 66 7e-12
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 65 1e-11
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 62 7e-11
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 62 9e-11
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 61 2e-10
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 61 2e-10
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 46 5e-06
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 36 0.007
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 32 0.084
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 32 0.084
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 31 0.26
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 30 0.45
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 30 0.45
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 29 1.0
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 28 1.4
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 28 1.4
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 28 1.8
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar... 28 1.8
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 28 1.8
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 28 1.8
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 2.4
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c... 27 3.2
SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subuni... 27 3.2
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 27 3.2
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 4.2
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 27 4.2
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 4.2
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 27 4.2
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 26 5.5
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 26 5.5
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 26 5.5
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 25 9.6
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.6
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 25 9.6
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 146 bits (354), Expect = 3e-36
Identities = 65/84 (77%), Positives = 76/84 (90%)
Frame = +3
Query: 510 VDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPP 689
VD+LPPEADSSISML+ DE+PDV Y+D+GG+D QKQE+REAVELPLT +LYRQIGI+PP
Sbjct: 109 VDILPPEADSSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPP 168
Query: 690 RGVLMYGPPGCGKTMLAKAVAHHT 761
RGVL+YGPPG GKTML KAVA+ T
Sbjct: 169 RGVLLYGPPGTGKTMLVKAVANST 192
Score = 141 bits (342), Expect = 9e-35
Identities = 70/103 (67%), Positives = 87/103 (84%)
Frame = +1
Query: 238 KNVRVLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTG 417
+ + +L++QE +IK++ ++LK+E + AQEEVKRIQSVPLVIGQFLEA+DQNT IVGSTTG
Sbjct: 18 RQLEMLDLQEGFIKEDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEAIDQNTAIVGSTTG 77
Query: 418 SNYYVRILSTIDRELLKPSASVALHKHSNAQLTSCLLKPTAQS 546
SNY VRILST+DRELLKPSASVAL +HSNA + +L P A S
Sbjct: 78 SNYVVRILSTLDRELLKPSASVALQRHSNALVD--ILPPEADS 118
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 107 bits (258), Expect = 1e-24
Identities = 47/84 (55%), Positives = 67/84 (79%)
Frame = +3
Query: 510 VDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPP 689
V +L + D I++++ D+ P Y+DIGG+++Q QEI+EAVELPLTH ELY ++GI+PP
Sbjct: 166 VGLLLDDTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPP 225
Query: 690 RGVLMYGPPGCGKTMLAKAVAHHT 761
+GV++YG PG GKT+LAKAVA+ T
Sbjct: 226 KGVILYGAPGTGKTLLAKAVANQT 249
Score = 63.7 bits (148), Expect = 3e-11
Identities = 36/98 (36%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Frame = +1
Query: 253 LEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSV---PLVIGQFLEAVDQNTGIVGSTTGSN 423
L ++EEY+++++R LK + QEE R+ + P+ +G E +D + IV ST G
Sbjct: 79 LLMEEEYVQNQER-LKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAIV-STAGPE 136
Query: 424 YYVRILSTIDRELLKPSASVALHKHSNAQLTSCLLKPT 537
YYV I+S +D+++L+P SV LH H + LL T
Sbjct: 137 YYVSIMSFVDKDMLEPGCSVLLH-HKAMSIVGLLLDDT 173
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 105 bits (252), Expect = 7e-24
Identities = 43/81 (53%), Positives = 62/81 (76%)
Frame = +3
Query: 519 LPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGV 698
LPP+ D S++M+Q +EKPDV Y D+GG Q + +RE VELPL E + ++GI+PP+G+
Sbjct: 157 LPPKIDPSVTMMQVEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGI 216
Query: 699 LMYGPPGCGKTMLAKAVAHHT 761
++YGPPG GKT+ A+AVA+ T
Sbjct: 217 MLYGPPGTGKTLCARAVANRT 237
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 102 bits (244), Expect = 7e-23
Identities = 40/84 (47%), Positives = 62/84 (73%)
Frame = +3
Query: 510 VDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPP 689
+ +LP + D +S++ ++ PD Y +GG++ Q +EI+E +ELP+ H EL+ +GI P
Sbjct: 120 IKILPNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQP 179
Query: 690 RGVLMYGPPGCGKTMLAKAVAHHT 761
+G+L+YGPPG GKT+LA+AVAHHT
Sbjct: 180 KGILLYGPPGTGKTLLARAVAHHT 203
Score = 32.7 bits (71), Expect = 0.063
Identities = 26/93 (27%), Positives = 45/93 (48%)
Frame = +1
Query: 223 VQETPKNVRVLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIV 402
+Q+T +N+R LE Q + R L+ EE++ +Q +G+ ++ + +N +V
Sbjct: 32 LQKT-QNLRRLEAQRNGLNARVRLLR-------EEIQLLQEPGSYVGEVIKTMGKNKVLV 83
Query: 403 GSTTGSNYYVRILSTIDRELLKPSASVALHKHS 501
Y V I ID + +KP+ VAL S
Sbjct: 84 KVHPEGKYVVDISPDIDIKEIKPNIRVALRNDS 116
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 98.3 bits (234), Expect = 1e-21
Identities = 40/81 (49%), Positives = 60/81 (74%)
Frame = +3
Query: 510 VDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPP 689
+D LP E DS + ++ DEKP +YSDIGG+ Q +E+ EA+ LP+ + +R++G++PP
Sbjct: 160 IDKLPSEYDSRVKAMEVDEKPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPP 219
Query: 690 RGVLMYGPPGCGKTMLAKAVA 752
+G LM+GPPG GKT+LA+A A
Sbjct: 220 KGCLMFGPPGTGKTLLARACA 240
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 93.5 bits (222), Expect = 3e-20
Identities = 39/79 (49%), Positives = 56/79 (70%)
Frame = +3
Query: 564 EKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAK 743
E P+V +SDIGG + KQ+++E+VE PLTH E + ++G+ PP+GVL+YGPPGC KT+ AK
Sbjct: 541 ESPNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCSKTITAK 600
Query: 744 AVAHHTKLHSFVSSDQSLY 800
A+A T L+ L+
Sbjct: 601 AIATETGLNFIAVKGPELF 619
Score = 74.9 bits (176), Expect = 1e-14
Identities = 35/74 (47%), Positives = 46/74 (62%)
Frame = +3
Query: 576 VQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVAH 755
V +S IGG+ Q +IR+ VELP + EL++ I PPRGVL+YGPPG GKTM+ +AVA
Sbjct: 276 VTFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLLYGPPGTGKTMVMRAVAA 335
Query: 756 HTKLHSFVSSDQSL 797
F S+
Sbjct: 336 EANAQVFTIDGPSV 349
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 92.7 bits (220), Expect = 6e-20
Identities = 37/79 (46%), Positives = 60/79 (75%)
Frame = +3
Query: 516 VLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRG 695
+LP E D + + ++ D+ ++ +GG++ Q +E+RE +ELPL + EL+ ++GI+PP+G
Sbjct: 109 ILPREVDPLVYNMSIEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKG 168
Query: 696 VLMYGPPGCGKTMLAKAVA 752
VL+YGPPG GKT+LA+AVA
Sbjct: 169 VLLYGPPGTGKTLLARAVA 187
Score = 43.2 bits (97), Expect = 4e-05
Identities = 21/67 (31%), Positives = 39/67 (58%)
Frame = +1
Query: 289 RNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLK 468
R+L K+Y ++++K +QSV +IG+ L+ +D IV +++G Y V + +D+ L
Sbjct: 33 RDLVKKYDKTEDDIKSLQSVGQIIGEVLKQLDSERFIVKASSGPRYVVGCRNNVDQSHLV 92
Query: 469 PSASVAL 489
V+L
Sbjct: 93 QGVRVSL 99
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 91.1 bits (216), Expect = 2e-19
Identities = 40/69 (57%), Positives = 52/69 (75%)
Frame = +3
Query: 573 DVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVA 752
+V Y DIGG Q +IRE VELPL H +L++ IGI+PPRG+LMYGPPG GKT++A+AVA
Sbjct: 220 EVGYDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARAVA 279
Query: 753 HHTKLHSFV 779
+ T F+
Sbjct: 280 NETGAFFFL 288
Score = 79.8 bits (188), Expect = 4e-16
Identities = 33/73 (45%), Positives = 54/73 (73%)
Frame = +3
Query: 564 EKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAK 743
E P+V++ DIGG++ K+E+RE V++P+ + E + + G+ P +GVL +GPPG GKT+LAK
Sbjct: 490 EVPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTGKTLLAK 549
Query: 744 AVAHHTKLHSFVS 782
A+A+ +F+S
Sbjct: 550 AIANECSA-NFIS 561
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 83.8 bits (198), Expect = 3e-17
Identities = 37/69 (53%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Frame = +3
Query: 555 QADEKP--DVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGK 728
+A+ +P D+ SDIGG+D E+ E V +P+ H E+Y+ GI PPRGVL++GPPGCGK
Sbjct: 162 EANREPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHGPPGCGK 221
Query: 729 TMLAKAVAH 755
TMLA A+A+
Sbjct: 222 TMLANALAN 230
Score = 75.8 bits (178), Expect = 7e-15
Identities = 33/71 (46%), Positives = 52/71 (73%)
Frame = +3
Query: 570 PDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAV 749
P V +++IG + + + E++ A+ P+ ELY+ +GI P GVL++GPPGCGKT+LAKAV
Sbjct: 487 PGVSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLWGPPGCGKTLLAKAV 546
Query: 750 AHHTKLHSFVS 782
A+ +K +F+S
Sbjct: 547 ANESKA-NFIS 556
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 74.1 bits (174), Expect = 2e-14
Identities = 37/71 (52%), Positives = 49/71 (69%)
Frame = +3
Query: 570 PDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAV 749
P V + DIGG++ K +R+ ++LPL EL+ Q G++P GVL+YGPPG GKT+LAKAV
Sbjct: 650 PKVNWDDIGGLEEAKTVLRDTLQLPLQFPELFSQ-GLKPRSGVLLYGPPGTGKTLLAKAV 708
Query: 750 AHHTKLHSFVS 782
A L FVS
Sbjct: 709 ATELSL-EFVS 718
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 68.9 bits (161), Expect = 8e-13
Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Frame = +3
Query: 546 SMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIG--IEPPRGVLMYGPPG 719
S L + DV + DIGGMD ++ + V PL + E++ G + P+G+L+YGPPG
Sbjct: 76 SQLVLPSEIDVSFDDIGGMDEHVNQLLQDVLFPLKYPEVFDTHGGLLSCPKGLLLYGPPG 135
Query: 720 CGKTMLAKAVAHHTK 764
CGKTMLAKA+A ++
Sbjct: 136 CGKTMLAKALAKQSQ 150
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 68.1 bits (159), Expect = 1e-12
Identities = 25/59 (42%), Positives = 44/59 (74%)
Frame = +3
Query: 576 VQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVA 752
+ + +GG+D +++E V LPL + E++++ ++PPRGVL +GPPG GKT++A+A+A
Sbjct: 263 LSFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKTLMARALA 321
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 67.7 bits (158), Expect = 2e-12
Identities = 35/74 (47%), Positives = 47/74 (63%)
Frame = +3
Query: 576 VQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVAH 755
V +SDI G+D K ++EAV P EL++ + EP +G+L++GPPG GKTMLA+AVA
Sbjct: 376 VYWSDIAGLDDAKNSLKEAVIYPFLRPELFQGLR-EPVQGMLLFGPPGTGKTMLARAVAT 434
Query: 756 HTKLHSFVSSDQSL 797
K F S SL
Sbjct: 435 EAKATFFSISASSL 448
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 65.7 bits (153), Expect = 7e-12
Identities = 30/63 (47%), Positives = 45/63 (71%)
Frame = +3
Query: 564 EKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAK 743
EKP+V++ DI G++ K+ ++E V LP+ +L+ G +P G+L+YGPPG GK+ LAK
Sbjct: 122 EKPNVRWDDIAGLENAKEALKETVLLPIKLPQLFSH-GRKPWSGILLYGPPGTGKSYLAK 180
Query: 744 AVA 752
AVA
Sbjct: 181 AVA 183
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 64.9 bits (151), Expect = 1e-11
Identities = 32/75 (42%), Positives = 48/75 (64%)
Frame = +3
Query: 573 DVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVA 752
+V + DI G++ K ++EAV P +L++ + EP RG+L++GPPG GKTMLA+AVA
Sbjct: 455 EVHWDDISGLEFAKHSLKEAVVYPFLRPDLFQGLR-EPARGMLLFGPPGTGKTMLARAVA 513
Query: 753 HHTKLHSFVSSDQSL 797
++ F S SL
Sbjct: 514 TESRSVFFSISASSL 528
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 62.5 bits (145), Expect = 7e-11
Identities = 25/62 (40%), Positives = 44/62 (70%)
Frame = +3
Query: 567 KPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKA 746
+ ++ ++ IGG++ +++E V LPL + E++ + I PPRGVL +GPPG GKT++A+
Sbjct: 366 RENLDFNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRGVLFHGPPGTGKTLMARV 425
Query: 747 VA 752
+A
Sbjct: 426 LA 427
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 62.1 bits (144), Expect = 9e-11
Identities = 24/62 (38%), Positives = 41/62 (66%)
Frame = +3
Query: 567 KPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKA 746
K +++ DI GM K+ +R+ +E P+ + +Y+Q + P G+L++G PGCGKT LA A
Sbjct: 600 KSSIRWIDIAGMQEAKEAVRDIIESPVKYSLIYKQCRLRLPTGILLFGYPGCGKTYLASA 659
Query: 747 VA 752
++
Sbjct: 660 IS 661
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 61.3 bits (142), Expect = 2e-10
Identities = 31/71 (43%), Positives = 46/71 (64%)
Frame = +3
Query: 573 DVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVA 752
+V++SD+ G+D K+E+ E V+ L + ++G + PRGVL+ GPPG GKTMLA+AVA
Sbjct: 263 NVRFSDVQGVDEAKEELEEIVDF-LRDPTHFTRLGGKLPRGVLLTGPPGTGKTMLARAVA 321
Query: 753 HHTKLHSFVSS 785
+ F S
Sbjct: 322 GEANVPFFFMS 332
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 60.9 bits (141), Expect = 2e-10
Identities = 28/72 (38%), Positives = 45/72 (62%)
Frame = +3
Query: 537 SSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPP 716
S M + ++++D+ G+D K+EI E V+ L + + Y ++G + PRG ++ GPP
Sbjct: 280 SRAKMFNHETDIKIKFADVAGVDEAKEEIMEFVKF-LKNPKFYERLGAKIPRGAILSGPP 338
Query: 717 GCGKTMLAKAVA 752
G GKT+LAKA A
Sbjct: 339 GTGKTLLAKATA 350
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 46.4 bits (105), Expect = 5e-06
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Frame = +3
Query: 567 KPDVQYSD--IGGMDTQKQEI-REAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTML 737
+P ++ D IGG+D++ I R A L + ++GI +G+L+YGPPG GKT++
Sbjct: 261 QPGFKFEDMGIGGLDSEFSAIFRRAFASRLFPPGMVEKLGINHVKGILLYGPPGTGKTLI 320
Query: 738 AKAV 749
A+ +
Sbjct: 321 ARQI 324
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 35.9 bits (79), Expect = 0.007
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +3
Query: 612 KQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVA 752
K+ I + V L + + Y GI RG L+YGPPG GKT A+A
Sbjct: 217 KKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYGPPGSGKTSFLYALA 263
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 32.3 bits (70), Expect = 0.084
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -2
Query: 411 GAANYACILINCLK-KLSNDKRNRLYALYFFLCMQIFFLQVSLFIFNVLFLY 259
G Y C+++ + ++N +N+ A FF C+ + F Q++L+ +F Y
Sbjct: 182 GHFQYNCVMLGLVMYAIANLLKNQYVAATFFFCLALTFKQMALYFAPPIFFY 233
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 32.3 bits (70), Expect = 0.084
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +1
Query: 364 QFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNAQLTSCLLKPTA 540
QFL N+G ++ G + R+LS + ++ PS+S L K +N QL + L P +
Sbjct: 465 QFLARNSDNSGQSYNSEGDSNSKRLLSMLSQQDTTPSSS-TLSKEANVQLANLFLTPNS 522
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 30.7 bits (66), Expect = 0.26
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 687 PRGVLMYGPPGCGKTMLAKAVAHH 758
P+G+ +YG GCGKT L H+
Sbjct: 118 PKGIYLYGDVGCGKTALMDLFYHN 141
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 29.9 bits (64), Expect = 0.45
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 696 VLMYGPPGCGKTMLAKAVAHHTKLHSFVSSD 788
+++ G PG GKT LA+ VA T+L + D
Sbjct: 11 IIICGTPGTGKTTLAEQVAETTELENICIGD 41
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 29.9 bits (64), Expect = 0.45
Identities = 19/77 (24%), Positives = 33/77 (42%)
Frame = +1
Query: 322 EEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHS 501
EE Q P +GQ+ + + Q I Y++RI+ ++LK S + +HK
Sbjct: 212 EENLDFQESPHYLGQYKKLLSQAMDIF-----KPYFIRIIKQTTDQVLKDSKKMDVHKQL 266
Query: 502 NAQLTSCLLKPTAQSLC 552
++ L +LC
Sbjct: 267 HSSLFYARFSAVGHNLC 283
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 28.7 bits (61), Expect = 1.0
Identities = 21/62 (33%), Positives = 32/62 (51%)
Frame = +3
Query: 567 KPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKA 746
K D +GG +++ REA + +T + ++ G +GVL G G GKT LA A
Sbjct: 28 KEDGTCESVGGGFIGQEKAREACGI-ITDLIKSKKFG---GKGVLFAGGAGTGKTALALA 83
Query: 747 VA 752
+A
Sbjct: 84 IA 85
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = -2
Query: 342 LYALYFFLCMQIFFLQVSLFIFNVLFL 262
+++L+FFLCM+ FF +++ F LFL
Sbjct: 360 IFSLFFFLCMRNFFPGFTIY-FPALFL 385
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 28.3 bits (60), Expect = 1.4
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 699 LMYGPPGCGKTMLAKAVAHH 758
L+ GPPG GKT+ + +V +H
Sbjct: 411 LIQGPPGTGKTVTSASVVYH 430
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 681 EPPRGVLMYGPPGCGKTMLAKAVA 752
+P L GP G GKT+L KA+A
Sbjct: 612 QPIASFLFCGPSGTGKTLLTKALA 635
>SPBC336.08 |spc24||spindle pole body protein
Spc24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 198
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +2
Query: 182 QSFDELESEDLYTKYKKLQRMLEF*KYKKSTLKMNNET 295
QSF E E E TK+K L R LE +LK E+
Sbjct: 36 QSFREKELEGSQTKFKVLSRKLEISTQAMESLKQTAES 73
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 690 RGVLMYGPPGCGKTMLAKAVA 752
+ VL+ GPPG GKT A VA
Sbjct: 410 KAVLLSGPPGIGKTTAAHLVA 430
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 690 RGVLMYGPPGCGKTMLAKAVA 752
R +LM GPP GKT +A +A
Sbjct: 66 RAILMAGPPSTGKTAIAMGMA 86
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 220 KVQETPKNVRVLEVQEEYIKDEQRNLKKEYLHAQEEVKRI 339
K+QET K + Q + +E NLKKE A + R+
Sbjct: 1374 KLQETAKETDTFKQQVNSLNEEVENLKKEVEQANTKNTRL 1413
>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 581
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 513 DVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEI 623
D L + D + +Q+D KPDV+ SD MD K ++
Sbjct: 255 DQLTVKEDFDLKDMQSDIKPDVEKSD--AMDDSKMKV 289
>SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subunit
Mmm1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 27.1 bits (57), Expect = 3.2
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +1
Query: 388 NTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNAQLTSCLLKPTAQSLCCKLMR 567
N G + + YVR LS D + V H+H+++QL + +L ++ C +
Sbjct: 127 NKGAQDKSMVDHIYVRDLSLGDGFPVFSHCRVLPHQHNSSQLRAEMLVSLTDNINCTVDT 186
Query: 568 NLMFN 582
L+ N
Sbjct: 187 KLLLN 191
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +3
Query: 597 GMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVA 752
G D + I +AV L ++ + P L GP G GKT L KA+A
Sbjct: 506 GQDEALKAIADAVRLSRAGLQNTNR----PLASFLFLGPTGVGKTALTKALA 553
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = +3
Query: 696 VLMYGPPGCGKTMLAKAVAH--HTKLH 770
VL+ G GCGKT + + +A H +LH
Sbjct: 1189 VLLVGDTGCGKTTVCQILAECLHKELH 1215
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 696 VLMYGPPGCGKTMLAKAVAHHT 761
+L+ G PG GKT L A+A T
Sbjct: 1562 ILLEGSPGVGKTSLITALARET 1583
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 272 YSSCTSRTLTFFGVSCTLCINLQIRVHQKIE 180
YSS SR + +SC + Q R+H K++
Sbjct: 378 YSSTCSRNRLCYSISCPRRLEQQARLHLKVQ 408
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 684 PPRGVLMYGPPGCGKTMLAKAV 749
PP V + GPPG GK+ L K++
Sbjct: 73 PPVIVAVMGPPGTGKSTLIKSL 94
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +3
Query: 600 MDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVA 752
+D +++ + L V + + G + + + GPPG GKT + K++A
Sbjct: 542 LDRDHYGLKDVKDRVLELVAVGKLRGTMQGKIMCLVGPPGVGKTSVGKSIA 592
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 214 IHKVQETPKNVRVLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQS 345
+ + ET + +E QEE IK+E+ ++E +EEV +S
Sbjct: 336 VKSLPETQRTTSRIETQEEEIKEEEMEGEEE--EEEEEVPNYES 377
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 298 KKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGI 399
K ++ A E+ + VPL +F + VDQN G+
Sbjct: 51 KSKHSEAVVEILKSAKVPLKNKEFSDLVDQNIGV 84
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 696 VLMYGPPGCGKTMLAKAVA 752
+L YGPPG GKT A A
Sbjct: 59 MLFYGPPGTGKTSTILACA 77
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 25.4 bits (53), Expect = 9.6
Identities = 9/40 (22%), Positives = 26/40 (65%)
Frame = +1
Query: 220 KVQETPKNVRVLEVQEEYIKDEQRNLKKEYLHAQEEVKRI 339
+++++ + V L+ + E ++D RN+ E + +++E+K +
Sbjct: 131 RLEKSDETVCKLKEENENLQDMLRNVGNELVESRDEIKEL 170
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 328 VKRIQSVPLVIGQFLEAVDQN 390
+K+ +SVP + GQF+E V+ N
Sbjct: 193 LKKSKSVPRLRGQFMEPVEHN 213
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 699 LMYGPPGCGKTMLAKAVA 752
++ GP G GKT +AKAV+
Sbjct: 18 VVIGPAGSGKTTMAKAVS 35
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,194,962
Number of Sequences: 5004
Number of extensions: 65316
Number of successful extensions: 269
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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