Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30523
(811 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 156 2e-38
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 108 4e-24
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 108 4e-24
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 108 5e-24
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 108 5e-24
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 105 3e-23
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 105 5e-23
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 104 6e-23
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 104 6e-23
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 90 2e-18
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 90 2e-18
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 90 2e-18
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 88 6e-18
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 88 6e-18
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 83 3e-16
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 75 6e-14
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 73 2e-13
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 69 5e-12
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 68 6e-12
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 68 9e-12
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 68 9e-12
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 68 9e-12
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 68 9e-12
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 67 1e-11
At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 67 1e-11
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 66 2e-11
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 66 2e-11
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 66 3e-11
At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ... 66 3e-11
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 65 6e-11
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 64 8e-11
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 64 1e-10
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 64 1e-10
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 64 1e-10
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 63 2e-10
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 62 3e-10
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 62 4e-10
At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWI... 62 6e-10
At3g02450.1 68416.m00232 cell division protein ftsH, putative si... 61 7e-10
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 61 1e-09
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 60 2e-09
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 60 2e-09
At2g34560.2 68415.m04246 katanin, putative similar to katanin p6... 60 2e-09
At2g34560.1 68415.m04245 katanin, putative similar to katanin p6... 60 2e-09
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 60 2e-09
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 59 3e-09
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 59 3e-09
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 59 4e-09
At2g26140.1 68415.m03137 FtsH protease, putative contains simila... 56 3e-08
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 55 6e-08
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 54 8e-08
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 54 8e-08
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 53 3e-07
At2g18193.1 68415.m02117 AAA-type ATPase family protein contains... 48 1e-05
At2g18190.1 68415.m02116 AAA-type ATPase family protein contains... 48 1e-05
At4g04180.1 68417.m00593 AAA-type ATPase family protein contains... 46 3e-05
At5g17760.2 68418.m02083 AAA-type ATPase family protein contains... 46 4e-05
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains... 46 4e-05
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 46 4e-05
At1g43910.1 68414.m05066 AAA-type ATPase family protein contains... 45 7e-05
At5g17730.1 68418.m02079 AAA-type ATPase family protein contains... 43 3e-04
At3g50930.1 68416.m05576 AAA-type ATPase family protein contains... 42 4e-04
At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1, ... 42 5e-04
At3g28600.1 68416.m03570 AAA-type ATPase family protein contains... 42 5e-04
At3g50940.1 68416.m05577 AAA-type ATPase family protein contains... 40 0.003
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ... 39 0.003
At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuc... 38 0.006
At5g17750.1 68418.m02081 AAA-type ATPase family protein contains... 38 0.006
At3g28520.1 68416.m03562 AAA-type ATPase family protein contains... 38 0.006
At3g28540.1 68416.m03564 AAA-type ATPase family protein contains... 38 0.008
At1g08270.2 68414.m00912 expressed protein low similarity to SP|... 38 0.008
At4g25835.1 68417.m03716 AAA-type ATPase family protein contains... 38 0.010
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains... 37 0.014
At3g28570.1 68416.m03567 AAA-type ATPase family protein contains... 37 0.014
At5g40010.1 68418.m04852 AAA-type ATPase family protein contains... 37 0.018
At3g28610.1 68416.m03571 AAA-type ATPase family protein contains... 37 0.018
At5g16930.1 68418.m01984 AAA-type ATPase family protein contains... 36 0.024
At4g30250.1 68417.m04301 AAA-type ATPase family protein contains... 36 0.024
At4g05380.1 68417.m00820 AAA-type ATPase family protein contains... 36 0.024
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains... 36 0.024
At4g36580.1 68417.m05193 AAA-type ATPase family protein contains... 36 0.032
At2g37280.1 68415.m04573 ABC transporter family protein similar ... 36 0.032
At2g18330.1 68415.m02136 AAA-type ATPase family protein contains... 36 0.032
At5g57480.1 68418.m07183 AAA-type ATPase family protein contains... 36 0.042
At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam pr... 35 0.056
At3g03060.1 68416.m00302 AAA-type ATPase family protein contains... 35 0.073
At4g15230.1 68417.m02333 ABC transporter family protein similar ... 34 0.097
At4g15215.1 68417.m02332 ABC transporter family protein similar ... 34 0.097
At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 34 0.097
At4g15236.1 68417.m02335 ABC transporter family protein similar ... 34 0.13
At3g53480.1 68416.m05904 ABC transporter family protein PDR5-lik... 34 0.13
At4g24710.1 68417.m03536 AAA-type ATPase family protein similar ... 33 0.17
At1g08270.1 68414.m00913 expressed protein low similarity to SP|... 33 0.17
At1g21690.2 68414.m02715 replication factor C 37 kDa, putative S... 33 0.22
At1g21690.1 68414.m02714 replication factor C 37 kDa, putative S... 33 0.22
At3g04210.1 68416.m00445 disease resistance protein (TIR-NBS cla... 32 0.39
At2g46620.1 68415.m05815 AAA-type ATPase family protein contains... 32 0.39
At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR... 32 0.52
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 32 0.52
At4g15233.1 68417.m02334 ABC transporter family protein similar ... 31 0.68
At1g24290.1 68414.m03065 AAA-type ATPase family protein similar ... 31 0.68
At2g36380.1 68415.m04464 ABC transporter family protein related ... 31 0.90
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 31 0.90
At5g32169.1 68418.m03692 hypothetical protein 31 1.2
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 31 1.2
At3g16340.1 68416.m02066 ABC transporter family protein similar ... 30 1.6
At2g25530.1 68415.m03056 AFG1-like ATPase family protein contain... 30 1.6
At1g06720.1 68414.m00714 expressed protein contains Pfam domain,... 30 1.6
At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding ... 30 2.1
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos... 30 2.1
At1g66950.1 68414.m07612 ABC transporter family protein similar ... 30 2.1
At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding ... 29 2.8
At5g44510.1 68418.m05453 disease resistance protein (TIR-NBS-LRR... 29 2.8
At5g22330.1 68418.m02605 TATA box-binding protein-interacting pr... 29 2.8
At2g29940.1 68415.m03642 ABC transporter family protein similar ... 29 2.8
At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding ... 29 2.8
At5g47010.1 68418.m05794 RNA helicase, putative similar to type ... 29 3.7
At5g43900.1 68418.m05368 myosin heavy chain (MYA2) nearly identi... 29 3.7
At1g77470.1 68414.m09021 replication factor C 36 kDA, putative s... 29 3.7
At1g59870.1 68414.m06745 ABC transporter family protein similar ... 29 3.7
At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP1... 29 4.8
At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identic... 29 4.8
At1g65540.1 68414.m07435 calcium-binding EF hand family protein ... 29 4.8
At1g15210.1 68414.m01818 ABC transporter family protein Similar ... 29 4.8
At1g04700.1 68414.m00467 protein kinase family protein low simil... 29 4.8
At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a... 28 6.4
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR... 28 6.4
At3g19050.1 68416.m02420 kinesin motor protein-related contains ... 28 6.4
At3g05780.1 68416.m00649 Lon protease, putative similar to Lon p... 28 6.4
At2g26910.1 68415.m03228 ABC transporter family protein similar ... 28 6.4
At2g04240.2 68415.m00413 zinc finger (C3HC4-type RING finger) fa... 28 6.4
At2g04240.1 68415.m00412 zinc finger (C3HC4-type RING finger) fa... 28 6.4
At1g15520.1 68414.m01867 ABC transporter family protein similar ... 28 6.4
At5g45050.2 68418.m05524 disease resistance protein-related simi... 28 8.4
At5g45050.1 68418.m05523 disease resistance protein-related simi... 28 8.4
At4g28070.1 68417.m04026 AFG1-like ATPase family protein contain... 28 8.4
At3g62180.1 68416.m06986 invertase/pectin methylesterase inhibit... 28 8.4
At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 28 8.4
At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR... 28 8.4
At1g59780.1 68414.m06731 disease resistance protein (CC-NBS-LRR ... 28 8.4
At1g53470.1 68414.m06061 mechanosensitive ion channel domain-con... 28 8.4
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 156 bits (378), Expect = 2e-38
Identities = 76/109 (69%), Positives = 91/109 (83%)
Frame = +1
Query: 220 KVQETPKNVRVLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGI 399
+++ + + ++QEEY+KDEQ+NLK+E L AQEEVKRIQSVPLVIGQF+E VDQN GI
Sbjct: 33 RLKSLERQLEFTDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGI 92
Query: 400 VGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNAQLTSCLLKPTAQS 546
VGSTTGSNYYVRILSTI+RELLKPSASVALH+HSNA + +L P A S
Sbjct: 93 VGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVD--VLPPEADS 139
Score = 151 bits (367), Expect = 4e-37
Identities = 70/84 (83%), Positives = 76/84 (90%)
Frame = +3
Query: 510 VDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPP 689
VDVLPPEADSSIS+L EKPDV Y+DIGG D QKQEIREAVELPLTH ELY+QIGI+PP
Sbjct: 130 VDVLPPEADSSISLLSQSEKPDVSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPP 189
Query: 690 RGVLMYGPPGCGKTMLAKAVAHHT 761
RGVL+YGPPG GKTMLAKAVA+HT
Sbjct: 190 RGVLLYGPPGTGKTMLAKAVANHT 213
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 108 bits (260), Expect = 4e-24
Identities = 48/84 (57%), Positives = 65/84 (77%)
Frame = +3
Query: 510 VDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPP 689
V +L E D +S+++ ++ P Y+DIGG++ Q QEI+EAVELPLTH ELY IGI+PP
Sbjct: 163 VGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPP 222
Query: 690 RGVLMYGPPGCGKTMLAKAVAHHT 761
+GV++YG PG GKT+LAKAVA+ T
Sbjct: 223 KGVILYGEPGTGKTLLAKAVANST 246
Score = 60.1 bits (139), Expect = 2e-09
Identities = 29/83 (34%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Frame = +1
Query: 253 LEVQEEYIKDEQRNLKKEYLHAQEE---VKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSN 423
L ++EE++ +++R LK + A+E+ V ++ P+ +G E +D+N IV S+ G
Sbjct: 75 LLMEEEFVANQER-LKPQEEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSSSVGPE 133
Query: 424 YYVRILSTIDRELLKPSASVALH 492
YYV ILS +D++ L+P S+ +H
Sbjct: 134 YYVGILSFVDKDQLEPGCSILMH 156
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 108 bits (260), Expect = 4e-24
Identities = 48/84 (57%), Positives = 65/84 (77%)
Frame = +3
Query: 510 VDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPP 689
V +L E D +S+++ ++ P Y+DIGG++ Q QEI+EAVELPLTH ELY IGI+PP
Sbjct: 163 VGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPP 222
Query: 690 RGVLMYGPPGCGKTMLAKAVAHHT 761
+GV++YG PG GKT+LAKAVA+ T
Sbjct: 223 KGVILYGEPGTGKTLLAKAVANST 246
Score = 60.1 bits (139), Expect = 2e-09
Identities = 29/83 (34%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Frame = +1
Query: 253 LEVQEEYIKDEQRNLKKEYLHAQEE---VKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSN 423
L ++EE++ +++R LK + A+E+ V ++ P+ +G E +D+N IV S+ G
Sbjct: 75 LLMEEEFVANQER-LKPQEEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSSSVGPE 133
Query: 424 YYVRILSTIDRELLKPSASVALH 492
YYV ILS +D++ L+P S+ +H
Sbjct: 134 YYVGILSFVDKDQLEPGCSILMH 156
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 108 bits (259), Expect = 5e-24
Identities = 46/81 (56%), Positives = 63/81 (77%)
Frame = +3
Query: 519 LPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGV 698
LPP+ D S++M+ +EKPD YSDIGG Q ++IRE VELP+ H E + ++GI+PP+GV
Sbjct: 183 LPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGV 242
Query: 699 LMYGPPGCGKTMLAKAVAHHT 761
L YGPPG GKT++A+AVA+ T
Sbjct: 243 LCYGPPGSGKTLVARAVANRT 263
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 108 bits (259), Expect = 5e-24
Identities = 45/81 (55%), Positives = 64/81 (79%)
Frame = +3
Query: 519 LPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGV 698
LPP+ D S++M+ +EKPDV Y+D+GG Q +++RE VELP+ H E + ++GI+PP+GV
Sbjct: 146 LPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGV 205
Query: 699 LMYGPPGCGKTMLAKAVAHHT 761
L YGPPG GKT+LA+AVA+ T
Sbjct: 206 LCYGPPGTGKTLLARAVANRT 226
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 105 bits (252), Expect = 3e-23
Identities = 44/84 (52%), Positives = 62/84 (73%)
Frame = +3
Query: 510 VDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPP 689
+D LP E DS + ++ DEKP Y+DIGG++ Q QE+ EA+ LP+TH E + ++GI PP
Sbjct: 145 LDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGIRPP 204
Query: 690 RGVLMYGPPGCGKTMLAKAVAHHT 761
+GVL+YGPPG GKT++A+A A T
Sbjct: 205 KGVLLYGPPGTGKTLMARACAAQT 228
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 105 bits (251), Expect = 5e-23
Identities = 43/84 (51%), Positives = 62/84 (73%)
Frame = +3
Query: 510 VDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPP 689
+D LP E DS + ++ DEKP Y+DIGG++ Q QE+ EA+ LP+TH E + ++G+ PP
Sbjct: 146 LDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPP 205
Query: 690 RGVLMYGPPGCGKTMLAKAVAHHT 761
+GVL+YGPPG GKT++A+A A T
Sbjct: 206 KGVLLYGPPGTGKTLMARACAAQT 229
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 104 bits (250), Expect = 6e-23
Identities = 43/82 (52%), Positives = 62/82 (75%)
Frame = +3
Query: 516 VLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRG 695
VLP + D +++++ ++ PD Y IGG+D Q +EI+E +ELP+ H EL+ +GI P+G
Sbjct: 138 VLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKG 197
Query: 696 VLMYGPPGCGKTMLAKAVAHHT 761
VL+YGPPG GKT+LA+AVAHHT
Sbjct: 198 VLLYGPPGTGKTLLARAVAHHT 219
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 104 bits (250), Expect = 6e-23
Identities = 43/82 (52%), Positives = 62/82 (75%)
Frame = +3
Query: 516 VLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRG 695
VLP + D +++++ ++ PD Y IGG+D Q +EI+E +ELP+ H EL+ +GI P+G
Sbjct: 138 VLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKG 197
Query: 696 VLMYGPPGCGKTMLAKAVAHHT 761
VL+YGPPG GKT+LA+AVAHHT
Sbjct: 198 VLLYGPPGTGKTLLARAVAHHT 219
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 89.8 bits (213), Expect = 2e-18
Identities = 37/78 (47%), Positives = 59/78 (75%)
Frame = +3
Query: 519 LPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGV 698
LP E D + + ++ ++ YS +GG+ Q +E+RE++ELPL + EL+ ++GI+PP+GV
Sbjct: 117 LPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGV 176
Query: 699 LMYGPPGCGKTMLAKAVA 752
L+YGPPG GKT+LA+A+A
Sbjct: 177 LLYGPPGTGKTLLARAIA 194
Score = 48.0 bits (109), Expect = 7e-06
Identities = 25/79 (31%), Positives = 42/79 (53%)
Frame = +1
Query: 253 LEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYV 432
LE + ++ R KKE+ ++++K +QSV +IG+ L +D IV +++G Y V
Sbjct: 28 LESRVRTARENLRGAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVV 87
Query: 433 RILSTIDRELLKPSASVAL 489
S +D+E L V L
Sbjct: 88 GCRSKVDKEKLTSGTRVVL 106
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 89.8 bits (213), Expect = 2e-18
Identities = 36/63 (57%), Positives = 51/63 (80%)
Frame = +3
Query: 573 DVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVA 752
DV Y D+GG+ Q +IRE VELPL H +L++ IG++PP+G+L+YGPPG GKT++A+AVA
Sbjct: 203 DVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVA 262
Query: 753 HHT 761
+ T
Sbjct: 263 NET 265
Score = 85.4 bits (202), Expect = 4e-17
Identities = 35/73 (47%), Positives = 55/73 (75%)
Frame = +3
Query: 564 EKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAK 743
E P+V ++DIGG++ K+E++E V+ P+ H E + + G+ P +GVL YGPPGCGKT+LAK
Sbjct: 473 EVPNVSWNDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAK 532
Query: 744 AVAHHTKLHSFVS 782
A+A+ + +F+S
Sbjct: 533 AIANECQA-NFIS 544
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 89.8 bits (213), Expect = 2e-18
Identities = 37/78 (47%), Positives = 59/78 (75%)
Frame = +3
Query: 519 LPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGV 698
LP E D + + ++ ++ YS +GG+ Q +E+RE++ELPL + EL+ ++GI+PP+GV
Sbjct: 117 LPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGV 176
Query: 699 LMYGPPGCGKTMLAKAVA 752
L+YGPPG GKT+LA+A+A
Sbjct: 177 LLYGPPGTGKTLLARAIA 194
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/79 (31%), Positives = 42/79 (53%)
Frame = +1
Query: 253 LEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYV 432
LE + ++ R KKE+ ++++K +QSV +IG+ L +D IV +++G Y V
Sbjct: 28 LESRVRTARENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVV 87
Query: 433 RILSTIDRELLKPSASVAL 489
S +D+E L V L
Sbjct: 88 GCRSKVDKEKLTSGTRVVL 106
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 88.2 bits (209), Expect = 6e-18
Identities = 35/63 (55%), Positives = 51/63 (80%)
Frame = +3
Query: 573 DVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVA 752
+V Y D+GG+ Q +IRE VELPL H +L++ IG++PP+G+L+YGPPG GKT++A+AVA
Sbjct: 203 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVA 262
Query: 753 HHT 761
+ T
Sbjct: 263 NET 265
Score = 85.0 bits (201), Expect = 5e-17
Identities = 35/73 (47%), Positives = 54/73 (73%)
Frame = +3
Query: 564 EKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAK 743
E P+V + DIGG++ K+E++E V+ P+ H E + + G+ P +GVL YGPPGCGKT+LAK
Sbjct: 473 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAK 532
Query: 744 AVAHHTKLHSFVS 782
A+A+ + +F+S
Sbjct: 533 AIANECQA-NFIS 544
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 88.2 bits (209), Expect = 6e-18
Identities = 35/63 (55%), Positives = 51/63 (80%)
Frame = +3
Query: 573 DVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVA 752
+V Y D+GG+ Q +IRE VELPL H +L++ IG++PP+G+L+YGPPG GKT++A+AVA
Sbjct: 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVA 263
Query: 753 HHT 761
+ T
Sbjct: 264 NET 266
Score = 85.0 bits (201), Expect = 5e-17
Identities = 35/73 (47%), Positives = 54/73 (73%)
Frame = +3
Query: 564 EKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAK 743
E P+V + DIGG++ K+E++E V+ P+ H E + + G+ P +GVL YGPPGCGKT+LAK
Sbjct: 474 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAK 533
Query: 744 AVAHHTKLHSFVS 782
A+A+ + +F+S
Sbjct: 534 AIANECQA-NFIS 545
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 82.6 bits (195), Expect = 3e-16
Identities = 34/79 (43%), Positives = 50/79 (63%)
Frame = +3
Query: 564 EKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAK 743
E P V + D+GG + K ++ EAVE P H + +++IG PP G+LM+GPPGC KT++A+
Sbjct: 717 EVPKVNWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPPSGILMFGPPGCSKTLMAR 776
Query: 744 AVAHHTKLHSFVSSDQSLY 800
AVA KL+ L+
Sbjct: 777 AVASEAKLNFLAVKGPELF 795
Score = 51.6 bits (118), Expect = 6e-07
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Frame = +3
Query: 552 LQADEKPDV--QYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCG 725
LQ DE +V + S +GG+ + +R+ ++ L +G+ P +GVL++GPPG G
Sbjct: 372 LQFDEGENVGCEISKLGGLSKEYAILRDIIDSSSIKNSL-SSLGLRPTKGVLIHGPPGTG 430
Query: 726 KTMLAKAVAHHTKLHSF 776
KT LA+ A H+ ++ F
Sbjct: 431 KTSLARTFARHSGVNFF 447
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 74.9 bits (176), Expect = 6e-14
Identities = 33/79 (41%), Positives = 51/79 (64%)
Frame = +3
Query: 564 EKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAK 743
E P V + D+GG+ K+++++AVE P+ H + ++GI P RG+L++GPPGC KT LAK
Sbjct: 279 EIPKVTWDDVGGLKDLKKKLQQAVEWPIKHSAAFVKMGISPMRGILLHGPPGCSKTTLAK 338
Query: 744 AVAHHTKLHSFVSSDQSLY 800
A A+ + F S L+
Sbjct: 339 AAANAAQASFFSLSCAELF 357
Score = 63.7 bits (148), Expect = 1e-10
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Frame = +3
Query: 528 EADSSI-SMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLM 704
E +SS+ + +EK + ++IGG + Q +RE + P + R +G++ PRG+L+
Sbjct: 3 ETESSVCDNIAGNEKWRAE-AEIGGNERALQALRELIIFPFRYPLEARTLGLKWPRGLLL 61
Query: 705 YGPPGCGKTMLAKAVAHHTKLHSFVSSDQSLYRS 806
YGPPG GKT L +AV H V S S++R+
Sbjct: 62 YGPPGTGKTSLVRAVVQECDAHLIVLSPHSVHRA 95
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 73.3 bits (172), Expect = 2e-13
Identities = 35/75 (46%), Positives = 50/75 (66%)
Frame = +3
Query: 546 SMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCG 725
S L A + P+V++ D+GG++ K I + V+LPL H +L+ G+ GVL+YGPPG G
Sbjct: 645 SALGAPKVPNVKWDDVGGLEDVKTSILDTVQLPLLHKDLFSS-GLRKRSGVLLYGPPGTG 703
Query: 726 KTMLAKAVAHHTKLH 770
KT+LAKAVA L+
Sbjct: 704 KTLLAKAVATECSLN 718
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 68.5 bits (160), Expect = 5e-12
Identities = 32/77 (41%), Positives = 51/77 (66%)
Frame = +3
Query: 576 VQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVAH 755
V ++DIG +D K+ ++E V LPL +L++ ++P RG+L++GPPG GKTM+AKA+A+
Sbjct: 411 VTFADIGSLDETKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMMAKAIAN 470
Query: 756 HTKLHSFVSSDQSLYRS 806
SF++ S S
Sbjct: 471 EAGA-SFINVSMSTITS 486
>At4g23940.1 68417.m03443 FtsH protease, putative contains
similarity to zinc dependent protease GI:7650138 from
[Arabidopsis thaliana]
Length = 946
Score = 68.1 bits (159), Expect = 6e-12
Identities = 29/66 (43%), Positives = 48/66 (72%)
Frame = +3
Query: 555 QADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTM 734
+ D V+++D+ G+D E++E V+ L + +L+ ++GI+PP GVL+ GPPGCGKT+
Sbjct: 420 RVDGSTGVKFADVAGIDEAVDELQELVKY-LKNPDLFDKMGIKPPHGVLLEGPPGCGKTL 478
Query: 735 LAKAVA 752
+AKA+A
Sbjct: 479 VAKAIA 484
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 67.7 bits (158), Expect = 9e-12
Identities = 25/62 (40%), Positives = 42/62 (67%)
Frame = +3
Query: 570 PDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAV 749
PDV++ D+GG+D + + + P+ ++Y+ G++ G L+YGPPGCGKT++AKA
Sbjct: 523 PDVKWDDVGGLDHLRLQFNRYIVRPIKKPDIYKAFGVDLETGFLLYGPPGCGKTLIAKAA 582
Query: 750 AH 755
A+
Sbjct: 583 AN 584
Score = 62.9 bits (146), Expect = 2e-10
Identities = 25/58 (43%), Positives = 39/58 (67%)
Frame = +3
Query: 582 YSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVAH 755
+ D GG+ E+ V P+ + E +++IG++PP G+L +GPPGCGKT LA A+A+
Sbjct: 232 FKDFGGIKKILDELEMNVLFPILNPEPFKKIGVKPPSGILFHGPPGCGKTKLANAIAN 289
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 67.7 bits (158), Expect = 9e-12
Identities = 34/81 (41%), Positives = 51/81 (62%)
Frame = +3
Query: 564 EKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAK 743
E+ +V + DIG +D K+ ++E V LPL +L+ ++P RG+L++GPPG GKTMLAK
Sbjct: 514 EEINVTFKDIGALDEIKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAK 573
Query: 744 AVAHHTKLHSFVSSDQSLYRS 806
A+A SF++ S S
Sbjct: 574 AIAKEAGA-SFINVSMSTITS 593
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 67.7 bits (158), Expect = 9e-12
Identities = 34/81 (41%), Positives = 51/81 (62%)
Frame = +3
Query: 564 EKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAK 743
E+ +V + DIG +D K+ ++E V LPL +L+ ++P RG+L++GPPG GKTMLAK
Sbjct: 509 EEINVTFKDIGALDEIKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAK 568
Query: 744 AVAHHTKLHSFVSSDQSLYRS 806
A+A SF++ S S
Sbjct: 569 AIAKEAGA-SFINVSMSTITS 588
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 67.7 bits (158), Expect = 9e-12
Identities = 31/72 (43%), Positives = 46/72 (63%)
Frame = +3
Query: 537 SSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPP 716
+ I LQ +E D+ + DIGG+ +++E V PL + E + I PPRGVL+ GPP
Sbjct: 367 ADIQPLQINE--DINFDDIGGLSEYINDLKEMVFFPLLYPEFFASYSITPPRGVLLCGPP 424
Query: 717 GCGKTMLAKAVA 752
G GKT++A+A+A
Sbjct: 425 GTGKTLIARALA 436
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 67.3 bits (157), Expect = 1e-11
Identities = 33/61 (54%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Frame = +3
Query: 573 DVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGI-EPPRGVLMYGPPGCGKTMLAKAV 749
DV++ IGG++T KQ + E V LPL EL+ + P +GVL+YGPPG GKTMLAKA+
Sbjct: 80 DVEFGSIGGLETIKQALYELVILPLKRPELFAYGKLLGPQKGVLLYGPPGTGKTMLAKAI 139
Query: 750 A 752
A
Sbjct: 140 A 140
>At3g16290.1 68416.m02056 FtsH protease, putative contains
similarity to cell division protein FtsH GI:1652085 from
[Synechocystis sp. PCC 6803]
Length = 876
Score = 66.9 bits (156), Expect = 1e-11
Identities = 32/74 (43%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Frame = +3
Query: 573 DVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVA 752
DV+++D+ G+ + E+ E V+ TH E+YR+ G++ P G+L+ GPPG GKT+LAKAVA
Sbjct: 406 DVKFTDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVKIPGGILLCGPPGVGKTLLAKAVA 464
Query: 753 HHTKLHSF-VSSDQ 791
++ F +S+ Q
Sbjct: 465 GEAGVNFFSISASQ 478
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 66.5 bits (155), Expect = 2e-11
Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Frame = +3
Query: 573 DVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGI-EPPRGVLMYGPPGCGKTMLAKAV 749
DV++ IGG+++ KQ + E V LPL EL+ + P +GVL+YGPPG GKTMLAKA+
Sbjct: 83 DVEFGSIGGLESIKQALYELVILPLKRPELFAYGKLLGPQKGVLLYGPPGTGKTMLAKAI 142
Query: 750 AHHTK 764
A ++
Sbjct: 143 ARESE 147
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 66.5 bits (155), Expect = 2e-11
Identities = 34/78 (43%), Positives = 50/78 (64%)
Frame = +3
Query: 576 VQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVAH 755
+ ++D+ G+D K+E+ E VE L + E Y ++G PPRGVL+ G PG GKT+LAKAVA
Sbjct: 322 ITFADVAGVDEAKEELEEIVEF-LRNPEKYVRLGARPPRGVLLVGLPGTGKTLLAKAVAG 380
Query: 756 HTKLHSFVSSDQSLYRSL 809
++ F+S S + L
Sbjct: 381 EAEV-PFISCSASEFVEL 397
>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
zinc dependent protease [Arabidopsis thaliana]
GI:7650138; contains Pfam profile PF00004: ATPase AAA
family
Length = 855
Score = 65.7 bits (153), Expect = 3e-11
Identities = 33/83 (39%), Positives = 51/83 (61%)
Frame = +3
Query: 537 SSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPP 716
S + A+EK V + D G + K+E++E V + L + E ++ GI P+GVL++GPP
Sbjct: 300 SRAKFISAEEKTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPP 358
Query: 717 GCGKTMLAKAVAHHTKLHSFVSS 785
G GKT+LAKA+A L F ++
Sbjct: 359 GTGKTLLAKAIAGEAGLPFFAAN 381
>At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to
SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains
Pfam profiles PF00004: ATPase AAA family, PF04212: MIT
domain
Length = 487
Score = 65.7 bits (153), Expect = 3e-11
Identities = 34/79 (43%), Positives = 48/79 (60%)
Frame = +3
Query: 561 DEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLA 740
D P V++ D+ G++ KQ + E V LP +L+ + P RG+L++GPPG GKTMLA
Sbjct: 208 DRSPSVKWDDVAGLNGAKQALLEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLA 266
Query: 741 KAVAHHTKLHSFVSSDQSL 797
KAVA ++ F S SL
Sbjct: 267 KAVASESQATFFNVSASSL 285
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 64.9 bits (151), Expect = 6e-11
Identities = 33/78 (42%), Positives = 50/78 (64%)
Frame = +3
Query: 576 VQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVAH 755
+ ++D+ G+D K+E+ E VE L + + Y ++G PPRGVL+ G PG GKT+LAKAVA
Sbjct: 326 ITFADVAGVDEAKEELEEIVEF-LKNPDRYVRLGARPPRGVLLVGLPGTGKTLLAKAVAG 384
Query: 756 HTKLHSFVSSDQSLYRSL 809
+ + F+S S + L
Sbjct: 385 ESDV-PFISCSASEFVEL 401
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 64.5 bits (150), Expect = 8e-11
Identities = 32/64 (50%), Positives = 43/64 (67%)
Frame = +3
Query: 561 DEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLA 740
D P V++ D+ G+ K+ + EAV LPL E ++ I P +GVLM+GPPG GKT+LA
Sbjct: 231 DSTPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLA 289
Query: 741 KAVA 752
KAVA
Sbjct: 290 KAVA 293
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 64.1 bits (149), Expect = 1e-10
Identities = 30/60 (50%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Frame = +3
Query: 576 VQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGI-EPPRGVLMYGPPGCGKTMLAKAVA 752
V +SDIG ++ K ++E V LPL EL+ + + +P +G+L++GPPG GKTMLAKAVA
Sbjct: 947 VSFSDIGALENVKDTLKELVMLPLQRPELFGKGQLTKPTKGILLFGPPGTGKTMLAKAVA 1006
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 63.7 bits (148), Expect = 1e-10
Identities = 31/77 (40%), Positives = 45/77 (58%)
Frame = +3
Query: 522 PPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVL 701
P + S + Q + V + D+ G+D KQ+ E VE L E + +G + P+GVL
Sbjct: 206 PLQFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGAKIPKGVL 264
Query: 702 MYGPPGCGKTMLAKAVA 752
+ GPPG GKT+LAKA+A
Sbjct: 265 LIGPPGTGKTLLAKAIA 281
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 63.7 bits (148), Expect = 1e-10
Identities = 31/77 (40%), Positives = 44/77 (57%)
Frame = +3
Query: 522 PPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVL 701
P + S + Q + V + D+ G+D KQ+ E VE L E + +G P+GVL
Sbjct: 199 PLQIGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGARIPKGVL 257
Query: 702 MYGPPGCGKTMLAKAVA 752
+ GPPG GKT+LAKA+A
Sbjct: 258 LVGPPGTGKTLLAKAIA 274
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 63.3 bits (147), Expect = 2e-10
Identities = 29/60 (48%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Frame = +3
Query: 576 VQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGI-EPPRGVLMYGPPGCGKTMLAKAVA 752
V + DIG ++ K+ ++E V LPL EL+ + + +P +G+L++GPPG GKTMLAKAVA
Sbjct: 960 VSFDDIGALENVKETLKELVMLPLQRPELFDKGQLTKPTKGILLFGPPGTGKTMLAKAVA 1019
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 62.5 bits (145), Expect = 3e-10
Identities = 32/78 (41%), Positives = 47/78 (60%)
Frame = +3
Query: 564 EKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAK 743
EKP++++SD+ G+++ KQ ++EAV LP+ + + P R L+YGPPG GK+ LAK
Sbjct: 125 EKPNIKWSDVAGLESAKQALQEAVILPVKFPQFFTG-KRRPWRAFLLYGPPGTGKSYLAK 183
Query: 744 AVAHHTKLHSFVSSDQSL 797
AVA F S L
Sbjct: 184 AVATEADSTFFSVSSSDL 201
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains
Pfam profile PF00004: ATPase, AAA family
Length = 1122
Score = 62.1 bits (144), Expect = 4e-10
Identities = 30/61 (49%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Frame = +3
Query: 573 DVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPP-RGVLMYGPPGCGKTMLAKAV 749
DV + DIG ++ K ++E V LPL EL+ + + P +G+L++GPPG GKTMLAKAV
Sbjct: 816 DVTFDDIGALEKVKDILKELVMLPLQRPELFCKGELTKPCKGILLFGPPGTGKTMLAKAV 875
Query: 750 A 752
A
Sbjct: 876 A 876
>At3g27120.1 68416.m03393 spastin ATPase, putative similar to
SWISS-PROT:Q9QYY8 spastin (Fragment) [Mus musculus];
contains Pfam domain, PF00004: ATPase, AAA family
Length = 287
Score = 61.7 bits (143), Expect = 6e-10
Identities = 30/79 (37%), Positives = 47/79 (59%)
Frame = +3
Query: 561 DEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLA 740
D P+V++ DI G++ K+ + E V PL ++++ P +G+L++GPPG GKTM+
Sbjct: 2 DRDPNVRWDDIAGLEHAKKCVTEMVIWPLLRPDIFKGCR-SPGKGLLLFGPPGTGKTMIG 60
Query: 741 KAVAHHTKLHSFVSSDQSL 797
KA+A K F S SL
Sbjct: 61 KAIAGEAKATFFYISASSL 79
>At3g02450.1 68416.m00232 cell division protein ftsH, putative
similar to SWISS-PROT:P46469 cell division protein ftsH
homolog [Lactococcus lactis]; contains Pfam domain,
PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with
diverse cellular 'A'ctivities)
Length = 622
Score = 61.3 bits (142), Expect = 7e-10
Identities = 30/74 (40%), Positives = 46/74 (62%)
Frame = +3
Query: 531 ADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYG 710
A +S + + + P V + D+ G+D+ K E+ E V + Y+++G PRGVL+ G
Sbjct: 316 ASNSPAKKRRSKNPTVGFDDVEGVDSAKDELVEIVSCLQGSIN-YKKLGARLPRGVLLVG 374
Query: 711 PPGCGKTMLAKAVA 752
PPG GKT+LA+AVA
Sbjct: 375 PPGTGKTLLARAVA 388
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 60.9 bits (141), Expect = 1e-09
Identities = 29/71 (40%), Positives = 43/71 (60%)
Frame = +3
Query: 540 SISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPG 719
S + Q + + + D+ G+D KQ+ E VE L E + +G + P+GVL+ GPPG
Sbjct: 208 SKAKFQMEPNTGITFEDVAGVDEAKQDFEEIVEF-LKTPEKFSALGAKIPKGVLLTGPPG 266
Query: 720 CGKTMLAKAVA 752
GKT+LAKA+A
Sbjct: 267 TGKTLLAKAIA 277
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 60.1 bits (139), Expect = 2e-09
Identities = 29/72 (40%), Positives = 42/72 (58%)
Frame = +3
Query: 537 SSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPP 716
++I+ K + + D+ G D KQEI E V L + + Y +G + P+G L+ GPP
Sbjct: 306 ATITRADKHSKNKIYFKDVAGCDEAKQEIMEFVHF-LKNPKKYEDLGAKIPKGALLVGPP 364
Query: 717 GCGKTMLAKAVA 752
G GKT+LAKA A
Sbjct: 365 GTGKTLLAKATA 376
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 60.1 bits (139), Expect = 2e-09
Identities = 30/77 (38%), Positives = 46/77 (59%)
Frame = +3
Query: 522 PPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVL 701
P + S S Q + V ++D+ G D K E++E V+ L + + Y +G + P+G L
Sbjct: 241 PMDFGRSKSKFQEVPETGVSFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCL 299
Query: 702 MYGPPGCGKTMLAKAVA 752
+ GPPG GKT+LA+AVA
Sbjct: 300 LVGPPGTGKTLLARAVA 316
>At2g34560.2 68415.m04246 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 393
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/61 (40%), Positives = 44/61 (72%)
Frame = +3
Query: 570 PDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAV 749
P++++ I G++ K+ ++EAV +P+ + + + + P +G+L++GPPG GKTMLAKAV
Sbjct: 107 PNIKWESIKGLENAKKLLKEAVVMPIKYPTYFNGL-LTPWKGILLFGPPGTGKTMLAKAV 165
Query: 750 A 752
A
Sbjct: 166 A 166
>At2g34560.1 68415.m04245 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 384
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/61 (40%), Positives = 44/61 (72%)
Frame = +3
Query: 570 PDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAV 749
P++++ I G++ K+ ++EAV +P+ + + + + P +G+L++GPPG GKTMLAKAV
Sbjct: 98 PNIKWESIKGLENAKKLLKEAVVMPIKYPTYFNGL-LTPWKGILLFGPPGTGKTMLAKAV 156
Query: 750 A 752
A
Sbjct: 157 A 157
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 59.7 bits (138), Expect = 2e-09
Identities = 28/71 (39%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Frame = +3
Query: 543 ISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGI-EPPRGVLMYGPPG 719
+S + A + V++ DIG ++ K+ + E V LP+ EL+ + + P +G+L++GPPG
Sbjct: 337 VSAVVAPGEIGVKFEDIGALEDVKKALNELVILPMRRPELFARGNLLRPCKGILLFGPPG 396
Query: 720 CGKTMLAKAVA 752
GKT+LAKA+A
Sbjct: 397 TGKTLLAKALA 407
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 59.3 bits (137), Expect = 3e-09
Identities = 30/77 (38%), Positives = 45/77 (58%)
Frame = +3
Query: 522 PPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVL 701
P + S S Q + V + D+ G D K E++E V+ L + + Y +G + P+G L
Sbjct: 229 PMDFGRSKSKFQEVPETGVTFGDVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCL 287
Query: 702 MYGPPGCGKTMLAKAVA 752
+ GPPG GKT+LA+AVA
Sbjct: 288 LVGPPGTGKTLLARAVA 304
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/71 (39%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Frame = +3
Query: 543 ISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGI-EPPRGVLMYGPPG 719
+S + A + V++ DIG ++ K+ + E V LP+ EL+ + + P +G+L++GPPG
Sbjct: 136 VSAVVAPGEIGVKFDDIGALEHVKKTLNELVILPMRRPELFTRGNLLRPCKGILLFGPPG 195
Query: 720 CGKTMLAKAVA 752
GKT+LAKA+A
Sbjct: 196 TGKTLLAKALA 206
>At1g07510.1 68414.m00804 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 813
Score = 58.8 bits (136), Expect = 4e-09
Identities = 28/72 (38%), Positives = 42/72 (58%)
Frame = +3
Query: 537 SSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPP 716
+ I+ + K + + D+ G + KQEI E V L + + Y +G + P+G L+ GPP
Sbjct: 311 AQITRADKNSKNKIYFKDVAGCEEAKQEIMEFVHF-LQNPKKYEDLGAKIPKGALLVGPP 369
Query: 717 GCGKTMLAKAVA 752
G GKT+LAKA A
Sbjct: 370 GTGKTLLAKATA 381
>At2g26140.1 68415.m03137 FtsH protease, putative contains
similarity to YME1 GI:295582, a member of the
ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding
genes from [Saccharomyces cerevisiae]
Length = 717
Score = 56.0 bits (129), Expect = 3e-08
Identities = 27/67 (40%), Positives = 42/67 (62%)
Frame = +3
Query: 552 LQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKT 731
+Q ++SD+ G+D K E+ E V L + + ++G + P+GVL+ GPPG GKT
Sbjct: 216 VQPSMDSSTKFSDVKGVDEAKAELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKT 274
Query: 732 MLAKAVA 752
MLA+A+A
Sbjct: 275 MLARAIA 281
>At5g53170.1 68418.m06610 FtsH protease, putative similar to
ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
musculus]
Length = 806
Score = 54.8 bits (126), Expect = 6e-08
Identities = 27/63 (42%), Positives = 40/63 (63%)
Frame = +3
Query: 564 EKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAK 743
EK + D+ G D KQE+ E VE L + + ++G + P+G+L+ G PG GKT+LAK
Sbjct: 355 EKNVKTFKDVKGCDDAKQELEEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAK 413
Query: 744 AVA 752
A+A
Sbjct: 414 AIA 416
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 54.4 bits (125), Expect = 8e-08
Identities = 20/56 (35%), Positives = 38/56 (67%)
Frame = +3
Query: 582 YSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAV 749
+ + G++ Q ++E V +PL + E + +G+ PPRG+L++G PG GKT++ +A+
Sbjct: 718 WDSVAGLEGVTQCMKEVVLIPLLYPEFFDNLGLTPPRGILLHGHPGTGKTLVVRAL 773
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 1025
Score = 54.4 bits (125), Expect = 8e-08
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Frame = +3
Query: 576 VQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPP-RGVLMYGPPGCGKTMLAKAVA 752
V + DIG ++ K ++E V LP EL+ + + P G+L++GP G GKTMLAKAVA
Sbjct: 732 VTFDDIGALENVKDTLKELVMLPFQWPELFCKGQLTKPCNGILLFGPSGTGKTMLAKAVA 791
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 52.8 bits (121), Expect = 3e-07
Identities = 27/75 (36%), Positives = 41/75 (54%)
Frame = +3
Query: 558 ADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTML 737
A E + + D+GG+ K I+E +ELP +++ + + VL+YGPPGCGKT +
Sbjct: 835 ASEGGRLGWEDVGGVTDIKNAIKEMIELPSKFPKIFAKSPLRLRSNVLLYGPPGCGKTHI 894
Query: 738 AKAVAHHTKLHSFVS 782
A A L F+S
Sbjct: 895 VGAAAAACSLR-FIS 908
Score = 37.1 bits (82), Expect = 0.014
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 663 YRQIGIEPPRGVLMYGPPGCGKTMLAKAVAHH 758
+ + I P +L+YGPPG GKT+LA+A A +
Sbjct: 585 FSKFKIPSPGHILIYGPPGSGKTILARAAAKY 616
>At2g18193.1 68415.m02117 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 495
Score = 47.6 bits (108), Expect = 1e-05
Identities = 24/63 (38%), Positives = 37/63 (58%)
Frame = +3
Query: 612 KQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVAHHTKLHSFVSSDQ 791
K++I + +E L E Y+++G RG L+YGPPG GK+ L A+A++ K F
Sbjct: 218 KKKIIDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVFDLELS 277
Query: 792 SLY 800
S+Y
Sbjct: 278 SIY 280
>At2g18190.1 68415.m02116 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 494
Score = 47.6 bits (108), Expect = 1e-05
Identities = 24/65 (36%), Positives = 38/65 (58%)
Frame = +3
Query: 612 KQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVAHHTKLHSFVSSDQ 791
K++I + +E L E Y+++G RG L+YGPPG GK+ L A+A++ K F
Sbjct: 219 KKKIIDDMERFLKRREFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVFDLELS 278
Query: 792 SLYRS 806
S+Y +
Sbjct: 279 SIYEN 283
>At4g04180.1 68417.m00593 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 609
Score = 46.0 bits (104), Expect = 3e-05
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Frame = +3
Query: 561 DEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQI--GIEP------PRGVLMYGPP 716
D ++ + +I G D QK+EI + + + L E+Y I G PR VL GPP
Sbjct: 311 DSMDEISWDNIAGYDQQKREIEDTILMALHSPEVYDDIVRGTRSKFESNRPRAVLFEGPP 370
Query: 717 GCGKTMLAKAVAH 755
G GKT A+ +A+
Sbjct: 371 GTGKTSCARVIAN 383
>At5g17760.2 68418.m02083 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 341
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/54 (37%), Positives = 34/54 (62%)
Frame = +3
Query: 603 DTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVAHHTK 764
D K+++ E ++ + E Y+++G RG L+YGPPG GK+ L A+A++ K
Sbjct: 225 DDLKRDVIEDLDRFIRRKEFYKRVGKAWKRGYLLYGPPGTGKSSLVAAMANYLK 278
>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 505
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/54 (37%), Positives = 34/54 (62%)
Frame = +3
Query: 603 DTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVAHHTK 764
D K+++ E ++ + E Y+++G RG L+YGPPG GK+ L A+A++ K
Sbjct: 225 DDLKRDVIEDLDRFIRRKEFYKRVGKAWKRGYLLYGPPGTGKSSLVAAMANYLK 278
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/68 (30%), Positives = 39/68 (57%)
Frame = +3
Query: 564 EKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAK 743
+ P + + +++ ++EI E V L + + ++++G PRGVL+ G G GKT LA
Sbjct: 417 KNPPIPLKNFASIESMREEINEVVAF-LQNPKAFQEMGARAPRGVLIVGERGTGKTSLAL 475
Query: 744 AVAHHTKL 767
A+A ++
Sbjct: 476 AIAAEARV 483
>At1g43910.1 68414.m05066 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 44.8 bits (101), Expect = 7e-05
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +3
Query: 657 ELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVAHHTKLHSFVSSDQSL 797
+ ++ +G RG L+YGPPG GK+ + A+A+H K H + QS+
Sbjct: 229 DFFKSVGRAWKRGYLLYGPPGTGKSSMVAAIANHMKYHIYDLQIQSV 275
>At5g17730.1 68418.m02079 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 470
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = +3
Query: 657 ELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVAHHTK 764
+ Y+++G RG L+YGPPG GKT L A+A++ K
Sbjct: 235 DFYKRVGKPWKRGYLLYGPPGTGKTSLVAAIANYLK 270
>At3g50930.1 68416.m05576 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 576
Score = 42.3 bits (95), Expect = 4e-04
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +3
Query: 600 MDTQ-KQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVAHH 758
MD+ K + E ++ + + Y+++G RG L+YGPPG GK+ L A+A+H
Sbjct: 269 MDSDVKTSVMEDLDKFVKRRDFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANH 322
>At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1,
Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens,
EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849
contains Pfam profile: ATPase family PF00004
gene_id:K17E7.100 contains Pfam profile: ATPase family
PF00004
Length = 533
Score = 41.9 bits (94), Expect = 5e-04
Identities = 19/54 (35%), Positives = 33/54 (61%)
Frame = +3
Query: 603 DTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVAHHTK 764
D K+ + E ++ + + Y+++G RG L+YGPPG GK+ L A+A++ K
Sbjct: 217 DDLKRSMIEDLDRFVGRKDFYKRVGKAWKRGYLLYGPPGTGKSSLVAAMANYLK 270
>At3g28600.1 68416.m03570 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 41.9 bits (94), Expect = 5e-04
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +3
Query: 600 MDTQK-QEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVAHH 758
MDT+K +EI + E Y++IG RG L++GPPG GK+ + A+A+H
Sbjct: 206 MDTKKKEEILNDLAAFSNGKEYYKKIGKAWKRGYLLHGPPGTGKSTMIAAMANH 259
>At3g50940.1 68416.m05577 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +3
Query: 612 KQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVAHH 758
K+ + E ++ + Y ++G RG L+YGPPG GK+ L A+A+H
Sbjct: 222 KKNLVEDLDRFVQRKGFYGRVGKAWKRGYLLYGPPGTGKSSLIAAIANH 270
>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
SP|P18708 Vesicular-fusion protein NSF
(N-ethylmaleimide-sensitive fusion protein)
(NEM-sensitive fusion protein) {Cricetulus griseus};
contains Pfam profiles PF00004: ATPase AAA family,
PF02359: Cell division protein 48 (CDC48) N-terminal
domain; contains non-consensus AT-AC splice sites at
intron 2
Length = 742
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +3
Query: 591 IGGMDTQKQEI-REAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAV 749
IGG+ + +I R A + + ++GI+ +G+L++GPPG GKT++A+ +
Sbjct: 217 IGGLGAEFADIFRRAFASRVFPPHVTSRLGIKHVKGMLLFGPPGTGKTLMARQI 270
>At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1
nuclear gene encoding mitochondrial protein - Homo
sapiens, EMBL:AF026849 contains Pfam profile: ATPase
family PF00004
Length = 470
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +3
Query: 657 ELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVAH 755
E Y++IG RG L+YGPPG GK+ + A+A+
Sbjct: 231 EYYKKIGKAWKRGYLLYGPPGTGKSTMISAMAN 263
>At5g17750.1 68418.m02081 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 392
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +3
Query: 612 KQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVAHHTK 764
K + E ++ + + Y+++G R +YGPPG GK+ L A+A++ K
Sbjct: 195 KSSVMEDLDRFIKRKDYYKRVGKAWKRSYFLYGPPGTGKSSLVAAMANYLK 245
>At3g28520.1 68416.m03562 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 478
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +3
Query: 597 GMDT-QKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVAH 755
GMD +K+EI++ + + YR++ RG L++GPPG GK+ + A+A+
Sbjct: 197 GMDLDKKEEIKKDLIKFTKGKDYYRKVAKPWKRGYLLFGPPGTGKSTMISAIAN 250
>At3g28540.1 68416.m03564 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 510
Score = 37.9 bits (84), Expect = 0.008
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +3
Query: 600 MDTQKQEIREAVELPLTH-VELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVAH 755
MD +K+E + + T + YR++G RG L++GPPG GK+ + A+A+
Sbjct: 209 MDLEKKEGMKKDLIKFTKGKDYYRKVGKPWKRGYLLFGPPGTGKSTMISAMAN 261
>At1g08270.2 68414.m00912 expressed protein low similarity to
SP|P46467 SKD1 protein (Vacuolar sorting protein 4b)
{Mus musculus}
Length = 132
Score = 37.9 bits (84), Expect = 0.008
Identities = 16/45 (35%), Positives = 29/45 (64%)
Frame = +3
Query: 564 EKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGV 698
EKP+V+++ + G+++ KQ ++EAV LP+ + + I PR V
Sbjct: 86 EKPNVKWTVVAGLESAKQALKEAVILPVNFPQFFTARAIYDPRDV 130
>At4g25835.1 68417.m03716 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 506
Score = 37.5 bits (83), Expect = 0.010
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 588 DIGGMD-TQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVAHHTK 764
D MD +KQ+I E ++ Y + G RG L+YGPPG GK+ + A+A++ +
Sbjct: 203 DTLAMDPVKKQQIMEDLKDFAECQSFYERTGRAWKRGYLLYGPPGTGKSSMIAAMANYLR 262
>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 500
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/51 (33%), Positives = 31/51 (60%)
Frame = +3
Query: 603 DTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVAH 755
+ +K+EI+ + + Y++IG RG L++GPPG GK+ + A+A+
Sbjct: 212 ENKKEEIKSDLIKFSKSKDYYKKIGKAWKRGYLLFGPPGTGKSTMIAAMAN 262
>At3g28570.1 68416.m03567 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +3
Query: 657 ELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVAHHTKLHSF 776
E Y +IG RG L+YGPPG GK+ + A+A+ K + +
Sbjct: 226 EYYDRIGKAWKRGYLLYGPPGTGKSTMIAAMANLMKYNIY 265
>At5g40010.1 68418.m04852 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 514
Score = 36.7 bits (81), Expect = 0.018
Identities = 17/49 (34%), Positives = 30/49 (61%)
Frame = +3
Query: 609 QKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVAH 755
+K+EI+ + + Y++IG RG L++GPPG GK+ + A+A+
Sbjct: 217 KKEEIKNDLIKFSNSKDYYKKIGKAWKRGYLLFGPPGTGKSTMIAAMAN 265
>At3g28610.1 68416.m03571 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 473
Score = 36.7 bits (81), Expect = 0.018
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +3
Query: 657 ELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVAH 755
+ Y++IG RG L+YGPPG GK+ + A+A+
Sbjct: 226 DYYKKIGKAWKRGYLLYGPPGTGKSTMIAAMAN 258
>At5g16930.1 68418.m01984 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 644
Score = 36.3 bits (80), Expect = 0.024
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +3
Query: 684 PPRGVLMYGPPGCGKTMLAKAVAHHTKL 767
P R +L YGPPG GKTM A+ +A + L
Sbjct: 397 PFRNILFYGPPGTGKTMAARELARRSGL 424
>At4g30250.1 68417.m04301 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 512
Score = 36.3 bits (80), Expect = 0.024
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 588 DIGGMDTQKQE-IREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVAHH 758
D MD +K++ I E + Y++ G RG L+YGPPG GK+ L A+A++
Sbjct: 204 DTLAMDPEKKKRIMEDLREFANGQGFYQKTGRAWKRGYLLYGPPGTGKSSLIAAMANY 261
>At4g05380.1 68417.m00820 AAA-type ATPase family protein contains
similarity to mitochondrial ATPase (AAA family) Bcs1p,
Saccharomyces cerevisiae, Swiss Prot:P32839
Length = 248
Score = 36.3 bits (80), Expect = 0.024
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 657 ELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVAH 755
+ ++ +G RG L+YGPPG GK+ L A+A+
Sbjct: 21 DFFKTVGRAWKRGYLLYGPPGTGKSSLVAAIAN 53
>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 530
Score = 36.3 bits (80), Expect = 0.024
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +3
Query: 600 MDTQKQE-IREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVAH 755
MD +K+E I++ + + Y+++G RG L++GPPG GK+ + A+A+
Sbjct: 213 MDPEKKEGIKKDLIKFSKGKDYYKKVGKPWKRGYLLFGPPGTGKSTMIAAIAN 265
>At4g36580.1 68417.m05193 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 620
Score = 35.9 bits (79), Expect = 0.032
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +3
Query: 684 PPRGVLMYGPPGCGKTMLAKAVAHHTKL 767
P R ++ YGPPG GKTM+A+ +A + L
Sbjct: 369 PFRNMMFYGPPGTGKTMVAREIARKSGL 396
>At2g37280.1 68415.m04573 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1413
Score = 35.9 bits (79), Expect = 0.032
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +3
Query: 678 IEPPRGVLMYGPPGCGKTMLAKAVA 752
I P R L+ GPPGCGKT L KA++
Sbjct: 162 ISPGRLTLLLGPPGCGKTTLLKALS 186
>At2g18330.1 68415.m02136 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 636
Score = 35.9 bits (79), Expect = 0.032
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +3
Query: 684 PPRGVLMYGPPGCGKTMLAKAVAHHTKL 767
P R ++ YGPPG GKTM+A+ +A + L
Sbjct: 384 PFRNMMFYGPPGTGKTMVAREIARKSGL 411
>At5g57480.1 68418.m07183 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 520
Score = 35.5 bits (78), Expect = 0.042
Identities = 17/50 (34%), Positives = 30/50 (60%)
Frame = +3
Query: 609 QKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVAHH 758
+KQ+I + ++ Y++ G RG L+YGPPG GK+ + A+A++
Sbjct: 211 KKQQIMDDLKDFAEGQVFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANY 260
>At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam
profile: ATPase family PF00004
Length = 440
Score = 35.1 bits (77), Expect = 0.056
Identities = 15/49 (30%), Positives = 30/49 (61%)
Frame = +3
Query: 612 KQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVAHH 758
K+ + + ++L ++ + Y+++G R L++G PG GKT L A+A +
Sbjct: 174 KRRLIDDIDLFISKEDFYKRVGRHWMRYYLLHGLPGAGKTSLVAAIAKY 222
>At3g03060.1 68416.m00302 AAA-type ATPase family protein contains a
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 639
Score = 34.7 bits (76), Expect = 0.073
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +3
Query: 684 PPRGVLMYGPPGCGKTMLAKAVAHHTKL 767
P R +L++GPPG GKTM A+ +A + L
Sbjct: 396 PFRNILLHGPPGTGKTMAARELARKSGL 423
>At4g15230.1 68417.m02333 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, PDR5-like ABC transporter
[Spirodela polyrhiza] GI:1514643; contains Pfam profile
PF00005: ABC transporter
Length = 1326
Score = 34.3 bits (75), Expect = 0.097
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 678 IEPPRGVLMYGPPGCGKTMLAKAVA 752
+ P R L+ GPPGCGKT L +A++
Sbjct: 164 VRPGRMTLLLGPPGCGKTTLLQALS 188
>At4g15215.1 68417.m02332 ABC transporter family protein similar to
PDR5-like ABC transporter [Spirodela polyrhiza]
GI:1514643; contains Pfam profile PF00005: ABC
transporter
Length = 1390
Score = 34.3 bits (75), Expect = 0.097
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 678 IEPPRGVLMYGPPGCGKTMLAKAVA 752
+ P R L+ GPPGCGKT L +A++
Sbjct: 161 VRPGRMTLLLGPPGCGKTTLLQALS 185
>At1g79560.1 68414.m09275 FtsH protease, putative contains
similarity to chloroplast FtsH protease GI:5804782 from
[Nicotiana tabacum]
Length = 1008
Score = 34.3 bits (75), Expect = 0.097
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +3
Query: 690 RGVLMYGPPGCGKTMLAKAVAHHTKL 767
RGVL+ GPPG GKT+ A+ +A + L
Sbjct: 527 RGVLLSGPPGTGKTLFARTLAKESGL 552
>At4g15236.1 68417.m02335 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1388
Score = 33.9 bits (74), Expect = 0.13
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 678 IEPPRGVLMYGPPGCGKTMLAKAVA 752
I P R L+ GPPGCGKT L A++
Sbjct: 159 IRPKRMTLLLGPPGCGKTTLLLALS 183
>At3g53480.1 68416.m05904 ABC transporter family protein PDR5-like
ABC transporter, Spirodela polyrrhiza, EMBL:Z70524
Length = 1450
Score = 33.9 bits (74), Expect = 0.13
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3
Query: 678 IEPPRGVLMYGPPGCGKTMLAKAVA 752
I+P R L+ GPP CGKT L KA++
Sbjct: 197 IKPGRLTLLLGPPSCGKTTLLKALS 221
>At4g24710.1 68417.m03536 AAA-type ATPase family protein similar to
HPV16 E1 protein binding protein [Homo sapiens]
gi|2232019|gb|AAB64095; contains Pfam domain, PF00004:
ATPase, AAA family ('A'TPases 'A'ssociated with diverse
cellular 'A'ctivities)
Length = 467
Score = 33.5 bits (73), Expect = 0.17
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
Frame = +3
Query: 660 LYRQIGIEPP-----RGVLMYGPPGCGKTMLAKAVA 752
L+ Q G+ P R +L++GPPG GKT L KA+A
Sbjct: 188 LFTQKGVNPNLVSWNRIILLHGPPGTGKTSLCKALA 223
>At1g08270.1 68414.m00913 expressed protein low similarity to
SP|P46467 SKD1 protein (Vacuolar sorting protein 4b)
{Mus musculus}
Length = 126
Score = 33.5 bits (73), Expect = 0.17
Identities = 12/34 (35%), Positives = 25/34 (73%)
Frame = +3
Query: 564 EKPDVQYSDIGGMDTQKQEIREAVELPLTHVELY 665
EKP+V+++ + G+++ KQ ++EAV LP+ + +
Sbjct: 86 EKPNVKWTVVAGLESAKQALKEAVILPVNFPQFF 119
>At1g21690.2 68414.m02715 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 327
Score = 33.1 bits (72), Expect = 0.22
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 696 VLMYGPPGCGKTMLAKAVAH 755
+L YGPPG GKT A A+AH
Sbjct: 33 MLFYGPPGTGKTTTALAIAH 52
>At1g21690.1 68414.m02714 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 339
Score = 33.1 bits (72), Expect = 0.22
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 696 VLMYGPPGCGKTMLAKAVAH 755
+L YGPPG GKT A A+AH
Sbjct: 45 MLFYGPPGTGKTTTALAIAH 64
>At3g04210.1 68416.m00445 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 531
Score = 32.3 bits (70), Expect = 0.39
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +3
Query: 570 PDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAV 749
P +SD+ GM+ +++ + L L V R IGI +GPPG GKT +A+ +
Sbjct: 233 PSSDFSDLVGMEDHMKKLERMLYLDLNDV---RMIGI--------WGPPGIGKTSIARVL 281
>At2g46620.1 68415.m05815 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 491
Score = 32.3 bits (70), Expect = 0.39
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 600 MDTQ-KQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVAH 755
M+T K +++ +E L + Y ++G R L+YGP G GK+ A+A+
Sbjct: 201 METDLKNKVKSDLESFLKGKQYYNRLGRVWKRSYLLYGPSGTGKSSFVAAMAN 253
>At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1188
Score = 31.9 bits (69), Expect = 0.52
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +3
Query: 645 LTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVAHHTKLHSFVSS 785
L H+ IG + R +++YG G GKT LAK VA + H F S
Sbjct: 195 LQHISSLLSIGSDGVRVIVIYGMGGIGKTTLAK-VAFNEFSHLFEGS 240
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar
to pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 31.9 bits (69), Expect = 0.52
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +3
Query: 678 IEPPRGVLMYGPPGCGKTMLAKAVAHHTK 764
I+P R L+ GPPG GK+ L KA++ T+
Sbjct: 169 IKPGRLTLLLGPPGSGKSTLLKALSGKTE 197
>At4g15233.1 68417.m02334 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, PDR5-like ABC transporter
[Spirodela polyrhiza] GI:1514643; contains Pfam profile
PF00005: ABC transporter
Length = 1168
Score = 31.5 bits (68), Expect = 0.68
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 678 IEPPRGVLMYGPPGCGKTMLAKAVA 752
I P R L+ GPP CGKT L A++
Sbjct: 161 IRPKRMTLLLGPPSCGKTTLLLALS 185
>At1g24290.1 68414.m03065 AAA-type ATPase family protein similar to
Werner helicase interacting protein [Homo sapiens]
GI:14349166; contains Pfam profiles PF00004: ATPase
family associated with various cellular activities
(AAA), PF00627: UBA/TS-N domain; contains
ATP/GTP-binding site motif A (P-loop)
Length = 525
Score = 31.5 bits (68), Expect = 0.68
Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 3/32 (9%)
Frame = +3
Query: 696 VLMYGPPGCGKTMLAKAVAHHTK---LHSFVS 782
++ +GPPG GKT +AK++ + +K L+ FVS
Sbjct: 140 IVFWGPPGTGKTSIAKSLINSSKDPSLYRFVS 171
>At2g36380.1 68415.m04464 ABC transporter family protein related to
multi drug resistance proteins and P-glycoproteins
Length = 1453
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +3
Query: 654 VELYRQIG--IEPPRGVLMYGPPGCGKTMLAKAVA 752
+E+ + I I+P R L+ GPP GKT L +A+A
Sbjct: 186 IEILKDISGIIKPSRMTLLLGPPSSGKTTLLQALA 220
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 672 IGIEPPRGVLMYGPPGCGKTMLAKAVAHHTKLH-SFVSSDQSL 797
+ + R VL+YGP G GK+ L + +A + H F+ D L
Sbjct: 348 LAVSQKRPVLLYGPSGSGKSALIRKLADESGNHVVFIHMDDQL 390
>At5g32169.1 68418.m03692 hypothetical protein
Length = 258
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/32 (31%), Positives = 23/32 (71%)
Frame = -2
Query: 321 LCMQIFFLQVSLFIFNVLFLYF*NSNILWSFL 226
LC ++F +++SL++F++ FLY + ++ S +
Sbjct: 204 LCSRLFVIRISLYLFSIQFLYLISFTVVHSVI 235
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +3
Query: 690 RGVLMYGPPGCGKTMLAKAVAHH 758
R + ++G PG GKT LAKAV +H
Sbjct: 190 RSIGIWGMPGIGKTTLAKAVFNH 212
>At3g16340.1 68416.m02066 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]; contains Pfam profile: PF00005 ABC
transporter
Length = 1416
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 648 THVELYRQIG--IEPPRGVLMYGPPGCGKTMLAKAVA 752
T V + R + I+P R L+ GPP GKT L A+A
Sbjct: 158 TKVTILRDVSGIIKPSRMTLLLGPPSSGKTTLLLALA 194
>At2g25530.1 68415.m03056 AFG1-like ATPase family protein contains
Pfam profile: PF03969 AFG1-like ATPase
Length = 655
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 687 PRGVLMYGPPGCGKTML 737
P+G+ +YG GCGKTML
Sbjct: 241 PKGLYIYGNVGCGKTML 257
>At1g06720.1 68414.m00714 expressed protein contains Pfam domain,
PF04950: Protein of unknown function (DUF663)
Length = 1147
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 666 RQIGIEPPRGVLMYGPPGCGKTMLAKAV 749
R G PP V++ GPPG GK+++ K++
Sbjct: 76 RNYGEAPPFVVVVQGPPGVGKSLVIKSL 103
>At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding
subunit ClpX1 (CLPX) identical to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]
Length = 579
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 696 VLMYGPPGCGKTMLAKAVAHHTKLHSFVSSD 788
+L+ GP G GKT+LAK +A + FV +D
Sbjct: 226 ILLMGPTGSGKTLLAKTLARFVNV-PFVIAD 255
>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
identical to CIP1 (GI:836950) [Arabidopsis thaliana]
Length = 1305
Score = 29.9 bits (64), Expect = 2.1
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 208 RFIHKVQETPKNVRVLEVQEEYIKDEQR--NLKKEYLHAQEEVKRIQSVPLVIGQFLEAV 381
R IH+ + + RV E++ + EQR +L + A+EE K I S L I LE
Sbjct: 318 RDIHETHQRESSTRVSELEAQLESSEQRISDLTVDLKDAEEENKAISSKNLEIMDKLEQA 377
Query: 382 DQNT 393
QNT
Sbjct: 378 -QNT 380
>At1g66950.1 68414.m07612 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1454
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 678 IEPPRGVLMYGPPGCGKTMLAKAVA 752
++P R L+ GPP GKT L +A+A
Sbjct: 198 VKPSRMTLLLGPPSSGKTTLLQALA 222
>At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding
subunit ClpX, putative similar to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]; non-consensus splice donor GC at exon 4;
non-consensus splice donor AA at exon 7
Length = 606
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 696 VLMYGPPGCGKTMLAKAVAHHTKLHSFVSSDQSL 797
VL+ GP G GKT+LAK +A + ++ SL
Sbjct: 265 VLLLGPTGSGKTLLAKTLARIVNVPFAIADATSL 298
>At5g44510.1 68418.m05453 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1187
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +3
Query: 633 VELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVAHHTKLHSF 776
+E T + Q+ +E R + ++GP G GKT +++ V ++ H F
Sbjct: 216 IEAHTTEITSLLQLDLEEVRMIGIWGPAGIGKTTISR-VLYNKLFHQF 262
>At5g22330.1 68418.m02605 TATA box-binding protein-interacting
protein-related similar to TATA box-binding
protein-interacting protein SP:O35753 from [ Mus
musculus]
Length = 458
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +3
Query: 618 EIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVA 752
E REA L + ++ + G + +L+ GPPG GKT LA ++
Sbjct: 47 EAREAAGLVVDMIKQKKMAG----KALLLAGPPGTGKTALALGIS 87
>At2g29940.1 68415.m03642 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana
plumbaginifolia]
Length = 1426
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 678 IEPPRGVLMYGPPGCGKTMLAKAVA 752
I+P R L+ GPPG GK+ L A+A
Sbjct: 183 IKPGRMTLLLGPPGSGKSTLLLALA 207
>At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding
subunit ClpX, putative similar to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]
Length = 656
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3
Query: 696 VLMYGPPGCGKTMLAKAVAHHTKLHSFVSSD 788
VL+ GP G GKT+LAK +A + FV +D
Sbjct: 311 VLLMGPTGSGKTLLAKTLARLVNV-PFVIAD 340
>At5g47010.1 68418.m05794 RNA helicase, putative similar to type 1
RNA helicase pNORF1 [Homo sapiens] GI:1885356
Length = 1254
Score = 29.1 bits (62), Expect = 3.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 699 LMYGPPGCGKTMLAKAVAHH 758
L+ GPPG GKT+ + A+ +H
Sbjct: 507 LIQGPPGTGKTVTSAAIVYH 526
>At5g43900.1 68418.m05368 myosin heavy chain (MYA2) nearly identical
to PIR|S51824 myosin heavy chain MYA2 [Arabidopsis
thaliana]
Length = 1505
Score = 29.1 bits (62), Expect = 3.7
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Frame = +1
Query: 226 QETPKNVRVLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVG 405
QE K ++ E ++ + ++ + L+ + ++ EE + V+G E D +V
Sbjct: 265 QEDVKKFKLEEPKKYHYLNQSKCLELDSINDAEEYHATRRAMDVVGISTEEQDAIFSVVA 324
Query: 406 STTG-SNYYVRILSTIDRELLKPSASVALHKHSNAQLTSCLLKPTAQSLCCKLM 564
+ N ID + K S+ H + A+L SC K SLC ++M
Sbjct: 325 AILHIGNIEFAKGEEIDSSIPKDDKSL-FHLKTAAELLSCDEKALEDSLCKRIM 377
>At1g77470.1 68414.m09021 replication factor C 36 kDA, putative
similar to SWISS-PROT:P40937 activator 1 36 kDa subunit
(Replication factor C 36 kDa subunit, A1 36 kDa subunit,
RF-C 36 kDa subunit, RFC36) [Homo sapiens]
Length = 369
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +3
Query: 696 VLMYGPPGCGKTMLAKAVA 752
+L+YGPPG GKT AVA
Sbjct: 75 LLLYGPPGTGKTSTILAVA 93
>At1g59870.1 68414.m06745 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1469
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +3
Query: 678 IEPPRGVLMYGPPGCGKTMLAKAVAHHTKLHSFVSSD 788
I+P R L+ GPP GKT L A+A VS D
Sbjct: 194 IKPGRMTLLLGPPSSGKTTLLLALAGKLDKSLQVSGD 230
>At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP101,
putative similar to heat shock protein 101 GI:6715468
GB:AAF26423 from [Arabidopsis thaliana]
Length = 623
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 681 EPPRGVLMYGPPGCGKTMLAKAVA 752
+P L GP G GKT LAKA+A
Sbjct: 562 QPSGSFLFLGPTGVGKTELAKALA 585
>At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identical
to heat shock protein 101 GI:6715468 GB:AAF26423 from
[Arabidopsis thaliana]
Length = 911
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 681 EPPRGVLMYGPPGCGKTMLAKAVA 752
+P L GP G GKT LAKA+A
Sbjct: 597 QPTGSFLFLGPTGVGKTELAKALA 620
>At1g65540.1 68414.m07435 calcium-binding EF hand family protein
similar to leucine zipper-EF-hand containing
transmembrane protein 1 [Homo sapiens] GI:4235226;
contains Pfam profile PF00036: EF hand
Length = 736
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 223 VQETPKNVRVLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPL 354
V E + + LE+QEE IK+E+ ++E +E + V L
Sbjct: 491 VSERKRKLEYLEMQEELIKEEEEEEEEEMAKMKESASSQKDVAL 534
>At1g15210.1 68414.m01818 ABC transporter family protein Similar to
gb|Z70524 GI:1514643 PDR5-like ABC transporter from
Spirodela polyrrhiza and is a member of the PF|00005 ABC
transporter family. ESTs gb|N97039 and gb|T43169 come
from this gene
Length = 1442
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 678 IEPPRGVLMYGPPGCGKTMLAKAVA 752
++P R L+ GPP GKT L A+A
Sbjct: 192 VKPSRMTLLLGPPSSGKTTLLLALA 216
>At1g04700.1 68414.m00467 protein kinase family protein low
similarity to EDR1 [Arabidopsis thaliana] GI:11127925;
contains Pfam profile: PF00069 Eukaryotic protein kinase
domain
Length = 1042
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -3
Query: 767 QLSVMRNSFSQHSFATTWWSIHEHTPRRLNTDLP 666
++ + RNSF Q S T+ +S+H +R NTD+P
Sbjct: 330 KMQIPRNSFGQQSPPTSPFSVH----KRANTDVP 359
>At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial
almost identical to Lon protease homolog 2
mitochondrial precursor SP:P93655, GI:1848290 from
[Arabidopsis thaliana]
Length = 940
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +3
Query: 600 MDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVA 752
+D + + E L + + R G + + + GPPG GKT + +++A
Sbjct: 428 LDEDHYGLSDVKERILEFIAVGRLRGTSQGKIICLSGPPGVGKTSIGRSIA 478
>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1189
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 702 MYGPPGCGKTMLAKAVAHHTKLHSF 776
++GPPG GKT +A+ V ++ HSF
Sbjct: 262 IWGPPGIGKTTIAR-VVYNQLSHSF 285
>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
profile: PF00225 Kinesin motor domain; contains
non-consensus splice site (GC) at intron 12
Length = 2722
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1
Query: 211 FIHKVQETPKNVRVLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLE 375
F K T K V +LE Q E ++D+ R+ + QE+++ L+I +E
Sbjct: 1051 FQSKENVTEKQVEILETQMEELQDKLRDTTMDNEQLQEQLRGKDMELLIISNEME 1105
>At3g05780.1 68416.m00649 Lon protease, putative similar to Lon
protease homolog 2 SP:P93655
Length = 924
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +3
Query: 600 MDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLAKAVA 752
+D + + E L + + R G + + + GPPG GKT + +++A
Sbjct: 411 LDEDHYGLSDVKERILEFIAVGRLRGTSQGKIICLSGPPGVGKTSIGRSIA 461
>At2g26910.1 68415.m03228 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1420
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 678 IEPPRGVLMYGPPGCGKTMLAKAVA 752
I P R L+ GPP GKT L A+A
Sbjct: 158 IRPSRLTLLLGPPSSGKTTLLLALA 182
>At2g04240.2 68415.m00413 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 162
Score = 28.3 bits (60), Expect = 6.4
Identities = 7/27 (25%), Positives = 16/27 (59%)
Frame = -3
Query: 296 KFRCSSLMYSSCTSRTLTFFGVSCTLC 216
K +C L + +C + + ++ ++C LC
Sbjct: 118 KLKCGHLFHKTCLEKWIDYWNITCPLC 144
>At2g04240.1 68415.m00412 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 162
Score = 28.3 bits (60), Expect = 6.4
Identities = 7/27 (25%), Positives = 16/27 (59%)
Frame = -3
Query: 296 KFRCSSLMYSSCTSRTLTFFGVSCTLC 216
K +C L + +C + + ++ ++C LC
Sbjct: 118 KLKCGHLFHKTCLEKWIDYWNITCPLC 144
>At1g15520.1 68414.m01867 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana
plumbaginifolia]
Length = 1423
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 678 IEPPRGVLMYGPPGCGKTMLAKAVA 752
++P R L+ GPP GKT L A+A
Sbjct: 177 VKPGRMALLLGPPSSGKTTLLLALA 201
>At5g45050.2 68418.m05524 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1344
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +3
Query: 654 VELYRQIGIEPP--RGVLMYGPPGCGKTMLAKAV 749
+E+ + I +P R V ++G PG GKT LAKAV
Sbjct: 150 LEIEKMINKQPLDIRCVGIWGMPGIGKTTLAKAV 183
>At5g45050.1 68418.m05523 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1372
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +3
Query: 654 VELYRQIGIEPP--RGVLMYGPPGCGKTMLAKAV 749
+E+ + I +P R V ++G PG GKT LAKAV
Sbjct: 150 LEIEKMINKQPLDIRCVGIWGMPGIGKTTLAKAV 183
>At4g28070.1 68417.m04026 AFG1-like ATPase family protein contains
Pfam profile: PF03969 AFG1-like ATPase
Length = 464
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 678 IEPPRGVLMYGPPGCGKTMLAKAVAH 755
+ P +G+ +YG G GKTML H
Sbjct: 130 VSPVKGLYLYGGVGTGKTMLMDLFFH 155
>At3g62180.1 68416.m06986 invertase/pectin methylesterase inhibitor
family protein low similarity to pollen-specific pectin
esterase from Brassica rapa subsp. pekinensis
GI:1620652; contains Pfam profile PF04043: Plant
invertase/pectin methylesterase inhibitor
Length = 215
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 496 HSNAQLTSCLLKPTAQSLCCKLMRNLMFN 582
H+ A C + PT SLCCK ++++ N
Sbjct: 33 HAKAVAGICTVIPTDTSLCCKTLKHVPTN 61
>At3g54670.1 68416.m06049 structural maintenance of chromosomes
(SMC) family protein similar to SMC1 protein [Bos
taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC
protein) [Xenopus laevis] GI:3328231; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1257
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +1
Query: 220 KVQETPKNVRVLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQ 342
K+ K ++ E++++ IKD+ L++E + EE+ RI+
Sbjct: 729 KISGLEKKIQYAEIEKKSIKDKLPQLEQEERNIIEEIDRIK 769
>At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 896
Score = 27.9 bits (59), Expect = 8.4
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Frame = +3
Query: 537 SSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPP 716
S IS + P + D+ GM ++++ +++ + + IGI +GPP
Sbjct: 219 SDISEMLNHSTPSRDFDDLIGMGDHMEKMKPLLDIDSDEM---KTIGI--------WGPP 267
Query: 717 GCGKTMLAKAV--AHHTK--LHSFVSSDQSLY 800
G GKT +A+++ H K L F+ S ++ Y
Sbjct: 268 GVGKTTIARSLYNQHSDKFQLSVFMESIKTAY 299
>At1g59780.1 68414.m06731 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 906
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 672 IGIEPPRGVLMYGPPGCGKTMLAKAVAHHTKLHS 773
+G + GV + G G GKT LA+ + H K+ S
Sbjct: 175 VGNDSSHGVSITGLGGLGKTTLARQIFDHDKVKS 208
>At1g53470.1 68414.m06061 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 881
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Frame = -2
Query: 270 LFLYF*NSNILW--SFLYFVY 214
LF+YF SN LW LYFVY
Sbjct: 315 LFVYFVESNFLWRKKVLYFVY 335
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,470,156
Number of Sequences: 28952
Number of extensions: 337614
Number of successful extensions: 1415
Number of sequences better than 10.0: 141
Number of HSP's better than 10.0 without gapping: 1306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1395
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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