Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30519
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr 3||...    75   8e-15
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    30   0.31 
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    30   0.42 
SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3 |S...    27   2.9  
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    26   5.1  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   6.8  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   6.8  
SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr...    25   9.0  

>SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 75.4 bits (177), Expect = 8e-15
 Identities = 35/48 (72%), Positives = 44/48 (91%)
 Frame = +3

Query: 255 SSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREVQTSVRLFV 398
           S++AM I+NSFVNDIFERIA EAS+LA YNK+STI+SRE+QT+VRL +
Sbjct: 55  SNQAMRILNSFVNDIFERIATEASKLAAYNKKSTISSREIQTAVRLIL 102



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 17/20 (85%), Positives = 19/20 (95%)
 Frame = +1

Query: 196 ESYAIYIYKVLKQVHPDTGI 255
           E+Y+ YIYKVLKQVHPDTGI
Sbjct: 35  ETYSSYIYKVLKQVHPDTGI 54


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +2

Query: 287 RERHLRTYRCRSFSSRPLQQAFD--DNLEGGSDFSEIVCSRRT*MNIRLEEILFATNIKI 460
           RE+H R Y C   + RP  Q F   D+LE   +    +C  R  +  +   ++F T I +
Sbjct: 265 REKHERCYICDQVAGRPTHQYFKNYDSLERHFEKDHYICRERECLERKF--VVFGTEIDL 322


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 620  LYLC*LIFNITIYFPCPLLSIYGHLYLFI 534
            LY+  L+F +TI++PCP+   Y    +F+
Sbjct: 1277 LYIVHLLFLLTIFYPCPIAYTYVRNSIFL 1305


>SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 116

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +3

Query: 237 PSRHRYSSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREV 374
           P   + S +A   +   V++    +  EAS      KR TIT  +V
Sbjct: 26  PENAKISKEAKDCVQDCVSEFISFVTGEASEQCTQEKRKTITGEDV 71


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 240 SRHRYSSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITS 365
           S  R +S +    +  +ND F  +  +++ L+H+N R+T+ S
Sbjct: 276 SPQRMASDSYGRPSLHLNDPFPSVDLQSNELSHHNVRTTLFS 317


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 675 QSLFSNKYLQITYFYLHRSLFMLTYF 598
           +SLF N+ +Q  Y +  RSLF++ Y+
Sbjct: 791 ESLFQNQDVQQFYMHSLRSLFVVYYY 816


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +2

Query: 284  VRERHLRTYRCRSFSSRPLQQAFDDNLEGGSDFSEIV-CSRRT*MNIRLEEILFATNIKI 460
            VR  H  T + +S +   +  AF  ++       E+  CS  T    +L   L  +    
Sbjct: 1665 VRICHYLTSKVKSINKDQVFNAFSPDVSERPPLFEVASCSNETDSVEKLTPELSVSPESD 1724

Query: 461  IVVPDGHSEKLEIVLEK 511
            +   DG+S KLEIV  K
Sbjct: 1725 MHFKDGNSSKLEIVESK 1741


>SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 114

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 403 TDMNEHKIRRDTVRDEHKNHSCSR 474
           TD +EHK+  DT+     N  C R
Sbjct: 34  TDADEHKLVMDTLNSMDNNRRCFR 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,759,749
Number of Sequences: 5004
Number of extensions: 51682
Number of successful extensions: 160
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)