Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30519
(765 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0203 + 28391707-28392165 81 1e-15
01_01_0366 + 2871188-2871655 81 1e-15
03_02_0560 + 9462996-9463454 80 2e-15
01_06_1288 - 36007432-36007851 80 2e-15
01_01_0364 - 2856598-2857059 79 3e-15
08_02_1090 + 24254172-24254624 79 4e-15
05_05_0111 + 22479971-22480093,22480238-22480471 78 7e-15
01_01_0362 - 2843659-2844468,2844669-2844699,2844824-2844903,284... 78 9e-15
01_01_0358 - 2819235-2819696 78 9e-15
01_01_0331 + 2685802-2686263 78 9e-15
01_01_0329 + 2673479-2673940 78 9e-15
01_01_0360 - 2837046-2837507 77 2e-14
09_06_0354 - 22490833-22491417 50 2e-06
08_02_1089 + 24250953-24251123 50 3e-06
>05_07_0203 + 28391707-28392165
Length = 152
Score = 80.6 bits (190), Expect = 1e-15
Identities = 37/46 (80%), Positives = 44/46 (95%)
Frame = +3
Query: 255 SSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREVQTSVRL 392
SSKAMSIMNSF+NDIFE++AAEA++LA YNK+ TITSRE+QTSVRL
Sbjct: 83 SSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRL 128
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +1
Query: 196 ESYAIYIYKVLKQVHPDTGIRVK 264
E+Y IYI+KVLKQVHPD GI K
Sbjct: 63 ETYKIYIFKVLKQVHPDIGISSK 85
>01_01_0366 + 2871188-2871655
Length = 155
Score = 80.6 bits (190), Expect = 1e-15
Identities = 37/46 (80%), Positives = 44/46 (95%)
Frame = +3
Query: 255 SSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREVQTSVRL 392
SSKAMSIMNSF+NDIFE++AAEA++LA YNK+ TITSRE+QTSVRL
Sbjct: 86 SSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRL 131
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +1
Query: 196 ESYAIYIYKVLKQVHPDTGIRVK 264
E+Y IYI+KVLKQVHPD GI K
Sbjct: 66 ETYKIYIFKVLKQVHPDIGISSK 88
>03_02_0560 + 9462996-9463454
Length = 152
Score = 79.8 bits (188), Expect = 2e-15
Identities = 37/46 (80%), Positives = 43/46 (93%)
Frame = +3
Query: 255 SSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREVQTSVRL 392
SSKAMSIMNSF+NDIFE++A EA+RLA YNK+ TITSRE+QTSVRL
Sbjct: 83 SSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRL 128
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +1
Query: 196 ESYAIYIYKVLKQVHPDTGIRVK 264
E+Y IYI+KVLKQVHPD GI K
Sbjct: 63 ETYKIYIFKVLKQVHPDIGISSK 85
>01_06_1288 - 36007432-36007851
Length = 139
Score = 79.8 bits (188), Expect = 2e-15
Identities = 37/46 (80%), Positives = 43/46 (93%)
Frame = +3
Query: 255 SSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREVQTSVRL 392
SSKAMSIMNSF+NDIFE++A EA+RLA YNK+ TITSRE+QTSVRL
Sbjct: 70 SSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRL 115
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +1
Query: 196 ESYAIYIYKVLKQVHPDTGIRVK 264
E+Y IYI+KVLKQVHPD GI K
Sbjct: 50 ETYKIYIFKVLKQVHPDIGISSK 72
>01_01_0364 - 2856598-2857059
Length = 153
Score = 79.4 bits (187), Expect = 3e-15
Identities = 36/46 (78%), Positives = 44/46 (95%)
Frame = +3
Query: 255 SSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREVQTSVRL 392
SSKAMSIMNSF+NDIFE++AAEA++LA YNK+ TITSRE+QT+VRL
Sbjct: 84 SSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTAVRL 129
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +1
Query: 196 ESYAIYIYKVLKQVHPDTGIRVK 264
E+Y IYI+KVLKQVHPD GI K
Sbjct: 64 ETYKIYIFKVLKQVHPDIGISSK 86
>08_02_1090 + 24254172-24254624
Length = 150
Score = 79.0 bits (186), Expect = 4e-15
Identities = 36/46 (78%), Positives = 43/46 (93%)
Frame = +3
Query: 255 SSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREVQTSVRL 392
SSKAMSIMNSF+NDIFE++A EA++LA YNK+ TITSRE+QTSVRL
Sbjct: 81 SSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREIQTSVRL 126
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +1
Query: 196 ESYAIYIYKVLKQVHPDTGIRVK 264
E+Y IYI+KVLKQVHPD GI K
Sbjct: 61 ETYKIYIFKVLKQVHPDIGISSK 83
>05_05_0111 + 22479971-22480093,22480238-22480471
Length = 118
Score = 78.2 bits (184), Expect = 7e-15
Identities = 37/46 (80%), Positives = 42/46 (91%)
Frame = +3
Query: 255 SSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREVQTSVRL 392
SSKAMSIMNSFVNDIFE++ EA+RLA YNK+ TITSRE+QTSVRL
Sbjct: 49 SSKAMSIMNSFVNDIFEKLEQEAARLARYNKKPTITSREIQTSVRL 94
>01_01_0362 -
2843659-2844468,2844669-2844699,2844824-2844903,
2846680-2847831
Length = 690
Score = 77.8 bits (183), Expect = 9e-15
Identities = 35/46 (76%), Positives = 43/46 (93%)
Frame = +3
Query: 255 SSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREVQTSVRL 392
SSKAMSIMNSF+NDIFE++A E+++LA YNK+ TITSRE+QTSVRL
Sbjct: 621 SSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRL 666
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +1
Query: 196 ESYAIYIYKVLKQVHPDTGIRVK 264
E+Y IYI+KVLKQVHPD GI K
Sbjct: 601 ETYKIYIFKVLKQVHPDIGISSK 623
>01_01_0358 - 2819235-2819696
Length = 153
Score = 77.8 bits (183), Expect = 9e-15
Identities = 35/46 (76%), Positives = 43/46 (93%)
Frame = +3
Query: 255 SSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREVQTSVRL 392
SSKAMSIMNSF+NDIFE++A E+++LA YNK+ TITSRE+QTSVRL
Sbjct: 84 SSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRL 129
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +1
Query: 196 ESYAIYIYKVLKQVHPDTGIRVK 264
E+Y IYI+KVLKQVHPD GI K
Sbjct: 64 ETYKIYIFKVLKQVHPDIGISSK 86
>01_01_0331 + 2685802-2686263
Length = 153
Score = 77.8 bits (183), Expect = 9e-15
Identities = 35/46 (76%), Positives = 43/46 (93%)
Frame = +3
Query: 255 SSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREVQTSVRL 392
SSKAMSIMNSF+NDIFE++A E+++LA YNK+ TITSRE+QTSVRL
Sbjct: 84 SSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRL 129
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +1
Query: 196 ESYAIYIYKVLKQVHPDTGIRVK 264
E+Y IYI+KVLKQVHPD GI K
Sbjct: 64 ETYKIYIFKVLKQVHPDIGISSK 86
>01_01_0329 + 2673479-2673940
Length = 153
Score = 77.8 bits (183), Expect = 9e-15
Identities = 35/46 (76%), Positives = 43/46 (93%)
Frame = +3
Query: 255 SSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREVQTSVRL 392
SSKAMSIMNSF+NDIFE++A E+++LA YNK+ TITSRE+QTSVRL
Sbjct: 84 SSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRL 129
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +1
Query: 196 ESYAIYIYKVLKQVHPDTGIRVK 264
E+Y IYI+KVLKQVHPD GI K
Sbjct: 64 ETYKIYIFKVLKQVHPDIGISSK 86
>01_01_0360 - 2837046-2837507
Length = 153
Score = 76.6 bits (180), Expect = 2e-14
Identities = 34/46 (73%), Positives = 43/46 (93%)
Frame = +3
Query: 255 SSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREVQTSVRL 392
SSKAMSIMNSF+NDIFE++A E+++LA YNK+ TITSRE+QT+VRL
Sbjct: 84 SSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRL 129
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +1
Query: 196 ESYAIYIYKVLKQVHPDTGIRVK 264
E+Y IYI+KVLKQVHPD GI K
Sbjct: 64 ETYKIYIFKVLKQVHPDIGISSK 86
>09_06_0354 - 22490833-22491417
Length = 194
Score = 50.4 bits (115), Expect = 2e-06
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = +3
Query: 255 SSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREVQTSVRL 392
S++ M +++ + D+FER+A EASRL+ + R T+TSREVQ++VRL
Sbjct: 126 SAQTMDVLDMMMADMFERLADEASRLSKLSGRLTLTSREVQSAVRL 171
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 202 YAIYIYKVLKQVHPDTG 252
Y Y+++VLKQVHPD G
Sbjct: 108 YKRYVWRVLKQVHPDLG 124
>08_02_1089 + 24250953-24251123
Length = 56
Score = 49.6 bits (113), Expect = 3e-06
Identities = 21/32 (65%), Positives = 28/32 (87%)
Frame = +3
Query: 297 IFERIAAEASRLAHYNKRSTITSREVQTSVRL 392
+FE++ EA++LA YNK+ TITSRE+QTSVRL
Sbjct: 1 MFEKLVGEAAKLARYNKKPTITSREIQTSVRL 32
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,375,808
Number of Sequences: 37544
Number of extensions: 302975
Number of successful extensions: 747
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -