Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30519
(765 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59910.1 68418.m07513 histone H2B nearly identical to histone... 77 1e-14
At2g28720.1 68415.m03491 histone H2B, putative strong similarity... 77 1e-14
At3g46030.1 68416.m04980 histone H2B, putative strong similarity... 77 2e-14
At3g45980.1 68416.m04975 histone H2B identical to histone H2B Ar... 77 2e-14
At5g22880.1 68418.m02676 histone H2B, putative strong similarity... 76 2e-14
At1g07790.1 68414.m00843 histone H2B, putative strong similarity... 76 3e-14
At5g02570.1 68418.m00191 histone H2B, putative similar to histon... 75 4e-14
At3g53650.1 68416.m05926 histone H2B, putative similar to histon... 75 4e-14
At3g09480.1 68416.m01127 histone H2B, putative similar to histon... 74 9e-14
At2g37470.1 68415.m04596 histone H2B, putative strong similarity... 74 9e-14
At1g08170.1 68414.m00902 histone H2B family protein similar to h... 61 7e-10
At2g13560.1 68415.m01495 malate oxidoreductase, putative similar... 29 2.6
At4g31770.1 68417.m04508 calcineurin-like phosphoesterase family... 28 5.9
At3g57160.1 68416.m06364 expressed protein 28 5.9
>At5g59910.1 68418.m07513 histone H2B nearly identical to histone
H2B Arabidopsis thaliana GI:2407802; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 150
Score = 77.0 bits (181), Expect = 1e-14
Identities = 35/46 (76%), Positives = 42/46 (91%)
Frame = +3
Query: 255 SSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREVQTSVRL 392
SSKAM IMNSF+NDIFE++A EAS+LA YNK+ TITSRE+QT+VRL
Sbjct: 81 SSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRL 126
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +1
Query: 196 ESYAIYIYKVLKQVHPDTGIRVK 264
E+Y IYI+KVLKQVHPD GI K
Sbjct: 61 ETYKIYIFKVLKQVHPDIGISSK 83
>At2g28720.1 68415.m03491 histone H2B, putative strong similarity to
histone H2B Arabidopsis thaliana GI:2407802, Gossypium
hirsutum SP|O22582; contains Pfam profile PF00125 Core
histone H2A/H2B/H3/H4
Length = 151
Score = 77.0 bits (181), Expect = 1e-14
Identities = 35/46 (76%), Positives = 42/46 (91%)
Frame = +3
Query: 255 SSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREVQTSVRL 392
SSKAM IMNSF+NDIFE++A EAS+LA YNK+ TITSRE+QT+VRL
Sbjct: 82 SSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRL 127
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +1
Query: 196 ESYAIYIYKVLKQVHPDTGIRVK 264
E+Y IYI+KVLKQVHPD GI K
Sbjct: 62 ETYKIYIFKVLKQVHPDIGISSK 84
>At3g46030.1 68416.m04980 histone H2B, putative strong similarity to
histone H2B Arabidopsis thaliana GI:2407802, Gossypium
hirsutum SP|O22582, Lycopersicon esculentum GI:3021489;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 145
Score = 76.6 bits (180), Expect = 2e-14
Identities = 34/46 (73%), Positives = 43/46 (93%)
Frame = +3
Query: 255 SSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREVQTSVRL 392
SSKAM IMNSF+NDIFE++A+E+S+LA YNK+ TITSRE+QT+VRL
Sbjct: 76 SSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRL 121
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +1
Query: 196 ESYAIYIYKVLKQVHPDTGIRVK 264
E+Y IYI+KVLKQVHPD GI K
Sbjct: 56 ETYKIYIFKVLKQVHPDIGISSK 78
>At3g45980.1 68416.m04975 histone H2B identical to histone H2B
Arabidopsis thaliana GI:2407802; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 150
Score = 76.6 bits (180), Expect = 2e-14
Identities = 34/46 (73%), Positives = 43/46 (93%)
Frame = +3
Query: 255 SSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREVQTSVRL 392
SSKAM IMNSF+NDIFE++A+E+S+LA YNK+ TITSRE+QT+VRL
Sbjct: 81 SSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRL 126
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +1
Query: 196 ESYAIYIYKVLKQVHPDTGIRVK 264
E+Y IYI+KVLKQVHPD GI K
Sbjct: 61 ETYKIYIFKVLKQVHPDIGISSK 83
>At5g22880.1 68418.m02676 histone H2B, putative strong similarity to
histone H2B-3 Lycopersicon esculentum GI:3021485, H2B
Gossypium hirsutum SP|O22582; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 145
Score = 76.2 bits (179), Expect = 2e-14
Identities = 34/46 (73%), Positives = 42/46 (91%)
Frame = +3
Query: 255 SSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREVQTSVRL 392
SSKAM IMNSF+NDIFE++A E+S+LA YNK+ TITSRE+QT+VRL
Sbjct: 76 SSKAMGIMNSFINDIFEKLAGESSKLARYNKKPTITSREIQTAVRL 121
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +1
Query: 196 ESYAIYIYKVLKQVHPDTGIRVK 264
E+Y IYI+KVLKQVHPD GI K
Sbjct: 56 ETYKIYIFKVLKQVHPDIGISSK 78
>At1g07790.1 68414.m00843 histone H2B, putative strong similarity to
histone H2B Arabidopsis thaliana GI:2407802, Gossypium
hirsutum SP|O22582, Lycopersicon esculentum GI:3021489,
Capsicum annuum SP|O49118; contains Pfam profile PF00125
Core histone H2A/H2B/H3/H4
Length = 148
Score = 75.8 bits (178), Expect = 3e-14
Identities = 34/46 (73%), Positives = 42/46 (91%)
Frame = +3
Query: 255 SSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREVQTSVRL 392
SSKAM IMNSF+NDIFE++A E+S+LA YNK+ TITSRE+QT+VRL
Sbjct: 79 SSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRL 124
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +1
Query: 196 ESYAIYIYKVLKQVHPDTGIRVK 264
E+Y IYI+KVLKQVHPD GI K
Sbjct: 59 ETYKIYIFKVLKQVHPDIGISSK 81
>At5g02570.1 68418.m00191 histone H2B, putative similar to histone
H2B-2 Lycopersicon esculentum GI:3021483, Gossypium
hirsutum SP|O22582, Asparagus officinalis GI:563329;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 132
Score = 75.4 bits (177), Expect = 4e-14
Identities = 34/46 (73%), Positives = 41/46 (89%)
Frame = +3
Query: 255 SSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREVQTSVRL 392
S KAM IMNSF+NDIFE++A E+SRLA YNK+ TITSRE+QT+VRL
Sbjct: 63 SGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 108
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +1
Query: 196 ESYAIYIYKVLKQVHPDTGIRVK 264
E+Y IYI+KVLKQVHPD GI K
Sbjct: 43 ETYKIYIFKVLKQVHPDIGISGK 65
>At3g53650.1 68416.m05926 histone H2B, putative similar to histone
H2B from Lycopersicon esculentum, PIR:T06389 GI:3021483,
Gossypium hirsutum SP|O22582, Capsicum annuum SP|O49118;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 138
Score = 75.4 bits (177), Expect = 4e-14
Identities = 34/46 (73%), Positives = 41/46 (89%)
Frame = +3
Query: 255 SSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREVQTSVRL 392
S KAM IMNSF+NDIFE++A E+SRLA YNK+ TITSRE+QT+VRL
Sbjct: 69 SGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 114
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +1
Query: 196 ESYAIYIYKVLKQVHPDTGIRVK 264
E+Y IYI+KVLKQVHPD GI K
Sbjct: 49 ETYKIYIFKVLKQVHPDIGISGK 71
>At3g09480.1 68416.m01127 histone H2B, putative similar to histone
from Arabidopsis thaliana GI:2407802, Gossypium hirsutum
SP|O22582, H2B-3 GB:CAA12231 from [Lycopersicon
esculentum]; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 126
Score = 74.1 bits (174), Expect = 9e-14
Identities = 34/46 (73%), Positives = 40/46 (86%)
Frame = +3
Query: 255 SSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREVQTSVRL 392
S KAM IMNSF+ND FE+IA E+SRLA YNK+ TITSRE+QT+VRL
Sbjct: 57 SGKAMGIMNSFINDTFEKIALESSRLARYNKKPTITSREIQTAVRL 102
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +1
Query: 196 ESYAIYIYKVLKQVHPDTGIRVK 264
E+Y IY++KVLKQVHPD GI K
Sbjct: 37 ETYKIYLFKVLKQVHPDIGISGK 59
>At2g37470.1 68415.m04596 histone H2B, putative strong similarity to
histone H2B from Lycopersicon esculentum GI:3021483,
GI:3021485, Capsicum annuum SP|O49118; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 138
Score = 74.1 bits (174), Expect = 9e-14
Identities = 33/46 (71%), Positives = 41/46 (89%)
Frame = +3
Query: 255 SSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREVQTSVRL 392
S KAM IMNSF+NDIFE++A E+S+LA YNK+ TITSRE+QT+VRL
Sbjct: 70 SGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRL 115
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +1
Query: 196 ESYAIYIYKVLKQVHPDTGIRVK 264
E+Y IYI+KVLKQVHPD GI K
Sbjct: 50 ETYKIYIFKVLKQVHPDVGISGK 72
>At1g08170.1 68414.m00902 histone H2B family protein similar to
histone H2B from Chlamydomonas reinhardtii [SP|P54347,
SP|P54346, SP|P50565], Volvox carteri [SP|P16867,
SP|P16868]; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 243
Score = 61.3 bits (142), Expect = 7e-10
Identities = 26/46 (56%), Positives = 39/46 (84%)
Frame = +3
Query: 255 SSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREVQTSVRL 392
+SKAM+++N F+ D+FERIA EA+RL+ Y KR T++SRE++ +VRL
Sbjct: 169 TSKAMTVVNMFMGDMFERIAQEAARLSDYTKRRTLSSREIEAAVRL 214
Score = 35.9 bits (79), Expect = 0.030
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +1
Query: 196 ESYAIYIYKVLKQVHPDTGIRVK 264
+ Y Y+YKV+KQVHPD GI K
Sbjct: 149 DEYRRYVYKVMKQVHPDLGITSK 171
>At2g13560.1 68415.m01495 malate oxidoreductase, putative similar to
NAD-dependent malic enzyme 62 kDa isoform, mitochondrial
precursor (EC 1.1.1.39) (NAD-ME) (SP:P37221) {Solanum
tuberosum}
Length = 623
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 280 FMIDMALLEYRCRDGPASALCKCKWR 203
FM D+ LE + RDGP+ KWR
Sbjct: 89 FMTDLKRLEEQARDGPSDPNALAKWR 114
>At4g31770.1 68417.m04508 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 418
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -2
Query: 437 VSLLILCS-FMSVANKQSH*SLNLPRGYR 354
V LL+ C F +V N++ SLN+PR YR
Sbjct: 31 VDLLLCCGDFQAVRNEKDMDSLNVPRKYR 59
>At3g57160.1 68416.m06364 expressed protein
Length = 115
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 570 RTGEINSYVKNKLT*IENDVNRNK*FVNICLK 665
R G +N + NK+T + N+ NRN V +CLK
Sbjct: 43 RRGTLNKDILNKVTHLSNNSNRNT--VLVCLK 72
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,147,455
Number of Sequences: 28952
Number of extensions: 254390
Number of successful extensions: 724
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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