Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30517
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    95   1e-20
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    25   6.7  

>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 94.7 bits (225), Expect = 1e-20
 Identities = 46/83 (55%), Positives = 55/83 (66%)
 Frame = +3

Query: 261 PLAIALCSVSNPQLSVIDVLNKYSHDSDNDVAYXAIFAMGLVGAGTXNXXXXXXXXXXXX 440
           PLA+ L S SNPQ+ + D L++YSHD+D DVAY AIFAMGLVGAGT N            
Sbjct: 672 PLALGLLSASNPQMRIFDTLSRYSHDNDLDVAYNAIFAMGLVGAGTSNARLAQLLRQLAS 731

Query: 441 YHGKSPVHLFMVRLAQGLCHAGK 509
           Y+ K    LFMVR+AQGL + GK
Sbjct: 732 YYHKESNALFMVRIAQGLLYLGK 754



 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 19/40 (47%), Positives = 27/40 (67%)
 Frame = +1

Query: 130 SSVQAVATLGVAVIALAEETGAEMCTRIFGQLGRYGEPAV 249
           +++Q  A LGVA IA+ E+ GAEM  R F  +  YGEP++
Sbjct: 628 TTIQTFAALGVATIAMGEDIGAEMVLRHFDHMMHYGEPSI 667



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 18/38 (47%), Positives = 25/38 (65%)
 Frame = +2

Query: 506 QGTVTLCPAHANRRLLNQPALAGLLVVLTAFLDCXTII 619
           +GT+TL P H  R++L Q A AGL+ V+ A LD  T +
Sbjct: 754 KGTMTLNPYHTERQILGQTAFAGLMTVVLAMLDANTFV 791


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +2

Query: 128 CPRCKPWRPLASRSSHWPRKRAPKCAPASSDNWVGTG 238
           CP CK +RP   R   W   R PK      + + G G
Sbjct: 713 CPGCKAFRPATKRLEIW---RLPKILVIHLNRFSGHG 746


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.130    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,787,696
Number of Sequences: 5004
Number of extensions: 26777
Number of successful extensions: 63
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)