Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30517
(620 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0356 + 2563773-2563898,2564031-2564131,2564375-2564498,256... 83 1e-16
09_02_0460 + 9567656-9567766,9567849-9567949,9568527-9568647,956... 82 3e-16
06_03_1276 - 28907726-28907842,28908012-28908062,28908146-289082... 82 3e-16
11_08_0092 - 28307180-28307380,28307471-28307936,28308008-283081... 33 0.14
05_04_0188 - 18883979-18884250,18885046-18885666,18885762-188858... 31 0.56
09_04_0258 - 16175258-16176069,16176111-16176414 30 1.3
09_06_0181 + 21395695-21396735 29 2.3
02_05_0692 + 30973171-30973908 29 2.3
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489... 29 2.3
03_06_0100 - 31647506-31647664,31647752-31647835,31647933-316480... 29 3.9
02_05_1305 - 35586499-35586601,35586963-35587034,35587111-355872... 29 3.9
01_01_0773 + 6002563-6003069,6003183-6003299,6003447-6003539 29 3.9
09_06_0025 + 20308160-20308162,20308194-20308262,20308602-20309213 28 5.2
07_03_0387 - 17536026-17536636,17536772-17537150 28 5.2
02_02_0495 + 10954305-10954349,10954660-10955079 28 5.2
06_01_0672 - 4903126-4903219,4903322-4903430,4903620-4905096,490... 27 9.1
04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916 27 9.1
02_01_0712 + 5329016-5329744,5330477-5330521 27 9.1
>02_01_0356 +
2563773-2563898,2564031-2564131,2564375-2564498,
2564592-2564651,2564762-2564829,2565520-2565562,
2566026-2566091,2566237-2566275,2566375-2566457,
2566654-2566765,2566840-2566923,2567026-2567184,
2567268-2567372,2567451-2567555,2567661-2567801,
2567920-2568024,2568111-2568335,2568762-2568875,
2568963-2569178,2569674-2569733,2569827-2569940,
2570047-2570132,2570211-2570319,2570408-2570586,
2570673-2570741,2570792-2571005
Length = 968
Score = 83.4 bits (197), Expect = 1e-16
Identities = 37/83 (44%), Positives = 53/83 (63%)
Frame = +3
Query: 261 PLAIALCSVSNPQLSVIDVLNKYSHDSDNDVAYXAIFAMGLVGAGTXNXXXXXXXXXXXX 440
PLA+ + +SNP+++V+D L++ SHD+D DV+ AI ++G +GAGT N
Sbjct: 680 PLALGILCISNPKVNVMDTLSRLSHDADADVSMAAIISLGFIGAGTNNARIAGMLRNLSS 739
Query: 441 YHGKSPVHLFMVRLAQGLCHAGK 509
Y+ K HLF VR+AQGL H GK
Sbjct: 740 YYYKEAAHLFCVRIAQGLVHLGK 762
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +1
Query: 139 QAVATLGVAVIALAEETGAEMCTRIFGQLGRYGE 240
Q A LG+A+IA+AEE GAEM R +L +YGE
Sbjct: 639 QGPAVLGIALIAMAEELGAEMAVRSLERLLQYGE 672
>09_02_0460 +
9567656-9567766,9567849-9567949,9568527-9568647,
9568733-9568792,9569022-9569089,9569469-9569535,
9569586-9569666,9570152-9570217,9570372-9570410,
9570527-9570609,9570712-9570823,9570902-9570982,
9571132-9571290,9571397-9571504,9571570-9571674,
9571765-9571905,9572007-9572147,9572205-9572426,
9573617-9573730,9573830-9574045,9574373-9574432,
9574513-9574626,9574735-9574820,9574904-9575012,
9575099-9575277,9575357-9575429
Length = 938
Score = 82.2 bits (194), Expect = 3e-16
Identities = 37/83 (44%), Positives = 54/83 (65%)
Frame = +3
Query: 261 PLAIALCSVSNPQLSVIDVLNKYSHDSDNDVAYXAIFAMGLVGAGTXNXXXXXXXXXXXX 440
PLA+ L +SNP+++V+D +++ SHD+D +V+ AI ++GL+GAGT N
Sbjct: 720 PLALGLLCISNPKVNVMDTMSRLSHDADAEVSMAAIISLGLIGAGTNNARIAGMLRNLSS 779
Query: 441 YHGKSPVHLFMVRLAQGLCHAGK 509
Y+ K HLF VR+AQGL H GK
Sbjct: 780 YYYKEAGHLFCVRIAQGLVHLGK 802
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/38 (52%), Positives = 27/38 (71%)
Frame = +2
Query: 506 QGTVTLCPAHANRRLLNQPALAGLLVVLTAFLDCXTII 619
+G +TL P H++R LL+ ALAGL+ VL A LD +II
Sbjct: 802 KGLLTLSPYHSDRFLLSPIALAGLVTVLHACLDMKSII 839
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +1
Query: 139 QAVATLGVAVIALAEETGAEMCTRIFGQLGRYGE 240
Q A LG+++I++AEE GAEM R +L +YGE
Sbjct: 679 QGPAVLGISLISMAEELGAEMAVRSLERLLQYGE 712
>06_03_1276 -
28907726-28907842,28908012-28908062,28908146-28908254,
28908345-28908430,28908537-28908650,28908731-28908790,
28909088-28909303,28909401-28909514,28910632-28910853,
28910946-28911050,28911136-28911276,28911368-28911472,
28911538-28911645,28911753-28911911,28912060-28912140,
28912219-28912330,28912433-28912515,28912631-28912669,
28913061-28913126,28913601-28913643,28913969-28914036,
28914264-28914323,28914409-28914529,28915167-28915267,
28915354-28915494
Length = 873
Score = 82.2 bits (194), Expect = 3e-16
Identities = 37/83 (44%), Positives = 54/83 (65%)
Frame = +3
Query: 261 PLAIALCSVSNPQLSVIDVLNKYSHDSDNDVAYXAIFAMGLVGAGTXNXXXXXXXXXXXX 440
PLA+ L +SNP+++V+D +++ SHD+D +V+ AI ++GL+GAGT N
Sbjct: 683 PLALGLLCISNPKVNVMDTMSRLSHDADAEVSMAAIISLGLIGAGTNNARIAGMLRNLSS 742
Query: 441 YHGKSPVHLFMVRLAQGLCHAGK 509
Y+ K HLF VR+AQGL H GK
Sbjct: 743 YYYKEAGHLFCVRIAQGLVHLGK 765
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = +1
Query: 139 QAVATLGVAVIALAEETGAEMCTRIFGQLGRYGE 240
Q A LG+++IA+AEE GAEM R +L +YGE
Sbjct: 642 QGPAVLGISLIAMAEELGAEMAVRSLERLLQYGE 675
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/38 (52%), Positives = 27/38 (71%)
Frame = +2
Query: 506 QGTVTLCPAHANRRLLNQPALAGLLVVLTAFLDCXTII 619
+G +TL P H++R LL+ ALAGL+ VL A LD +II
Sbjct: 765 KGLLTLSPYHSDRFLLSPIALAGLVTVLHACLDMKSII 802
>11_08_0092 -
28307180-28307380,28307471-28307936,28308008-28308117,
28308206-28308493,28309024-28309059
Length = 366
Score = 33.5 bits (73), Expect = 0.14
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = -1
Query: 329 VFIEHVDDGELRVGHGAQGDGERHGRRTAGSPYLPSCPKMRVHISAPVSSANAMTATP 156
+FI +D G HG Q DGER G P+ + P+ + P S++ T +P
Sbjct: 177 LFINDLDAGRHDAVHGEQPDGERDADEHRGQPHQRAAPR---DVQPPSPSSSPATTSP 231
>05_04_0188 -
18883979-18884250,18885046-18885666,18885762-18885887,
18886007-18886265
Length = 425
Score = 31.5 bits (68), Expect = 0.56
Identities = 20/49 (40%), Positives = 24/49 (48%)
Frame = +2
Query: 149 RPLASRSSHWPRKRAPKCAPASSDNWVGTGSRQCGGRAARHRPVLRVQP 295
+P SRSS W R R+P +P W G G GG R R V R+ P
Sbjct: 16 KPPVSRSSSWIR-RSPPPSPPHKKLWGGGG----GGGGGRSRYVCRIVP 59
>09_04_0258 - 16175258-16176069,16176111-16176414
Length = 371
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 332 GVFIEHVDDGELRVGHGAQGDGE-RHGRRTAGSP 234
GV+ +H ++GE G DGE R GR AG+P
Sbjct: 109 GVYSDHPEEGEFGRGAAQGEDGEHRRGRGEAGAP 142
>09_06_0181 + 21395695-21396735
Length = 346
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -1
Query: 359 VSDVVIRIVGVFIEHVDDGELRVGHGAQGDGERHGRRTAG 240
V+ VV+ + VDD VG GA GD + G+ AG
Sbjct: 126 VNSVVVLTFSAALLGVDDPSSSVGGGAGGDAVQRGKHAAG 165
>02_05_0692 + 30973171-30973908
Length = 245
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +2
Query: 164 RSSHWPRKRAPKCAPASSDNWVGTGSRQCGGRAARHRP-VLRVQPAALRHRRAQ*IL 331
R S +R P + +GSR CG R R RP V R +P + RR Q +L
Sbjct: 8 RRSEARGRRRPAARLVMGNGGGASGSRGCGLRHQRQRPSVWRQRPRSSSQRRRQWLL 64
>02_03_0307 +
17546263-17546299,17546522-17548018,17548859-17548949,
17549054-17549621,17550591-17550670,17550993-17551077,
17551172-17551263,17551355-17551423,17551587-17551655,
17552217-17552510,17552761-17552797,17552883-17552972,
17553520-17553585,17553704-17553818,17553902-17553940,
17554519-17554700
Length = 1136
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 161 SRSSHWPRKRAPKCAPASSDNWVGTGSRQCGGRAARHRP 277
SRS P + +CA + D+ V +CG R A+ P
Sbjct: 78 SRSVSRPEEEEEECASCTQDSTVSPPVSECGDRTAQQEP 116
>03_06_0100 -
31647506-31647664,31647752-31647835,31647933-31648089,
31648181-31648446,31648524-31648796,31648874-31648985,
31649112-31649331,31649476-31649899
Length = 564
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +2
Query: 152 PLASRSSHWPRKRAPKCAPASSDNWVGTGSRQCGG 256
P ASRS H PR P AP V +R+ GG
Sbjct: 12 PTASRSHHRPRLPLPAAAPPRRRVHVSCDARRTGG 46
>02_05_1305 -
35586499-35586601,35586963-35587034,35587111-35587232,
35587767-35587826,35587919-35587997,35588219-35588307,
35588405-35588492,35591761-35591821,35592546-35592890,
35593094-35594351
Length = 758
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = -2
Query: 514 RALPA*HSPCASRTMNRCTGDLPWYSASARSIVASLALXVPAPTSPMANMAL*ATSLSES 335
R+LP H AS + R P + +ARS++ L+L P +SP+ +L A S
Sbjct: 56 RSLPPPHPLDASLALLRLLAPHPRHHPTARSLLRDLSLRHPL-SSPLLLPSLLADPHLPS 114
Query: 334 WEYLL 320
W LL
Sbjct: 115 WLLLL 119
>01_01_0773 + 6002563-6003069,6003183-6003299,6003447-6003539
Length = 238
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -2
Query: 394 PAPTSPMANMAL*ATSLSESWEYLLSTSMTESCGLDTEHRAMASGTAAALP 242
PAP +P +A + W L + + + D EH+A A+G +A P
Sbjct: 21 PAPVAPRRRVARVRLAPRCQWRPLTARAQAAATQPDPEHQAPANGGPSAFP 71
>09_06_0025 + 20308160-20308162,20308194-20308262,20308602-20309213
Length = 227
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -3
Query: 285 RSTGRWRAARPPHCRLPVPTQLSEDAGAHFGARFLGQCDDRDAKGRHG 142
RS R ARP H L P +S+D G G G+ +++GR G
Sbjct: 88 RSHRRTPLARPSHSHLAPPPIVSDDDGGRSGG---GEGGGSESEGREG 132
>07_03_0387 - 17536026-17536636,17536772-17537150
Length = 329
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 290 GHGAQGDGERHGRRTAGSPYLPSCPKMRVHISAPVSSANAMTATP 156
G GD E G+R G P+ S P + + +AP ++ + + +P
Sbjct: 285 GRRCSGDPEPSGKRRRGRPHRDSTPVLIGNPNAPTTAYRSRSRSP 329
>02_02_0495 + 10954305-10954349,10954660-10955079
Length = 154
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = +2
Query: 182 RKRAPKCAPAS-----SDNWVGTGSRQCGGRAARHRPVLRVQP 295
RK+ P AP++ D+W T + G + R R LR+QP
Sbjct: 61 RKKTPASAPSTMGSNDGDHWPCTETATAGPESLRRRQRLRIQP 103
>06_01_0672 -
4903126-4903219,4903322-4903430,4903620-4905096,
4906200-4906538
Length = 672
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = -1
Query: 308 DGELRVGHGAQGDGERHGRRTAGSPYLP-SCPKMRVHISAPVSSANAMTATPRVATA 141
DG+L G+G Q R A SP P S + +S P ++ T +P A A
Sbjct: 103 DGDLAAGNGKQQKPGNLEARPAASPATPRSSSATKATLSRPRTTPRTTTPSPAGAAA 159
>04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916
Length = 234
Score = 27.5 bits (58), Expect = 9.1
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +2
Query: 125 SCPRCKPWRPLASRSSHWP--RKRAPKCAPASSDNWVGTGSRQCGGRAARHRPVLRVQPA 298
S P KP S S+ P AP+ A A+ D +GT + G AAR RP PA
Sbjct: 16 SSPSSKPKTKALSHSTEPPLSASSAPRRA-AAKDAKIGTETPAADGDAARKRPSAGDAPA 74
>02_01_0712 + 5329016-5329744,5330477-5330521
Length = 257
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -2
Query: 610 LAVEEGGEHDEQAGERGLVEQAPVRV-RGTQGHRALPA*HSPC 485
+AVEEGGE D + G V+ PV V G R PA PC
Sbjct: 185 IAVEEGGESD-RGEPAGAVDPLPVVVEEGGWSGRGEPAGCLPC 226
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.130 0.433
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,004,135
Number of Sequences: 37544
Number of extensions: 267092
Number of successful extensions: 1385
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1385
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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