Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30517
         (620 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome re...    99   2e-21
Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z78540-6|CAD30431.1|  887|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z72501-3|CAD30430.1|  887|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna b...    28   6.2  

>AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 1 protein.
          Length = 981

 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 47/83 (56%), Positives = 58/83 (69%)
 Frame = +3

Query: 261 PLAIALCSVSNPQLSVIDVLNKYSHDSDNDVAYXAIFAMGLVGAGTXNXXXXXXXXXXXX 440
           PLA++L SVSNPQL++++ L+K+SHDSD D A+ AIFAMGLVGAGT N            
Sbjct: 750 PLALSLLSVSNPQLNILETLSKFSHDSDADTAHNAIFAMGLVGAGTNNARLVAMLRNLAS 809

Query: 441 YHGKSPVHLFMVRLAQGLCHAGK 509
           YH K  V L +VR+AQGL H GK
Sbjct: 810 YHYKDQVSLMLVRIAQGLTHLGK 832



 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 22/41 (53%), Positives = 31/41 (75%)
 Frame = +1

Query: 127 LSSVQAVATLGVAVIALAEETGAEMCTRIFGQLGRYGEPAV 249
           LSS QAVA LG+ +IA+ ++ G++M  R+FG L RYGEP +
Sbjct: 705 LSSQQAVAVLGIGLIAMGDDIGSQMALRMFGHLIRYGEPVI 745



 Score = 37.5 bits (83), Expect = 0.008
 Identities = 18/38 (47%), Positives = 26/38 (68%)
 Frame = +2

Query: 506 QGTVTLCPAHANRRLLNQPALAGLLVVLTAFLDCXTII 619
           +GT+TL P H++R+LL+  ALA LL +  +FLD    I
Sbjct: 832 KGTMTLNPWHSDRQLLSPSALASLLSICFSFLDANNTI 869


>Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical protein
            R09A8.1 protein.
          Length = 1095

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 194  PKCAPASSDNWVGTGSRQCGGRAARHRPVLRVQPAALRHRRA 319
            P  APAS+++W+   SR  G    R  PV + Q    R   A
Sbjct: 964  PLLAPASNNSWITANSRATGILKGRSGPVDQSQNQNTRRENA 1005


>Z78540-6|CAD30431.1|  887|Caenorhabditis elegans Hypothetical
           protein C33G3.1b protein.
          Length = 887

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 246 CRLPVPTQLSEDAGAHFGARFLGQCD 169
           CR+P+  +L+   G HF A+++G  +
Sbjct: 20  CRIPLHNELAYQHGIHFEAKYVGSME 45


>Z72501-3|CAD30430.1|  887|Caenorhabditis elegans Hypothetical
           protein C33G3.1b protein.
          Length = 887

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 246 CRLPVPTQLSEDAGAHFGARFLGQCD 169
           CR+P+  +L+   G HF A+++G  +
Sbjct: 20  CRIPLHNELAYQHGIHFEAKYVGSME 45


>U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 5 protein.
          Length = 289

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 20/58 (34%), Positives = 25/58 (43%)
 Frame = +2

Query: 134 RCKPWRPLASRSSHWPRKRAPKCAPASSDNWVGTGSRQCGGRAARHRPVLRVQPAALR 307
           R +P RP  S     PR+R P  +P   D    +GSRQ    + R  P  R    A R
Sbjct: 81  RDRPMRPSPSP----PRRRRPSPSPPRRDRRDRSGSRQRRRASPRRSPAARSASPAKR 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.130    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,488,324
Number of Sequences: 27780
Number of extensions: 174868
Number of successful extensions: 513
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)