Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30517
         (620 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20580.1 68415.m02404 26S proteasome regulatory subunit S2 (R...    81   6e-16
At4g28470.1 68417.m04073 26S proteasome regulatory subunit, puta...    64   7e-11
At1g66600.1 68414.m07568 WRKY family transcription factor contai...    29   1.9  
At4g23870.1 68417.m03432 expressed protein predicted proteins, A...    27   7.6  

>At2g20580.1 68415.m02404 26S proteasome regulatory subunit S2
           (RPN1) contains an APC-complex (cyclosome) and
           proteasome component repeat ( PS50248)
          Length = 891

 Score = 81.0 bits (191), Expect = 6e-16
 Identities = 38/83 (45%), Positives = 54/83 (65%)
 Frame = +3

Query: 261 PLAIALCSVSNPQLSVIDVLNKYSHDSDNDVAYXAIFAMGLVGAGTXNXXXXXXXXXXXX 440
           PLA+ L  +SNP+++V+D L++ SHD+D++VA  AI ++GL+GAGT N            
Sbjct: 673 PLALGLLCISNPKVTVMDTLSRLSHDTDSEVAMSAIISLGLIGAGTNNARIAGMLRNLSS 732

Query: 441 YHGKSPVHLFMVRLAQGLCHAGK 509
           Y+ K    LF VR+AQGL H GK
Sbjct: 733 YYYKDMSLLFCVRIAQGLVHMGK 755



 Score = 35.9 bits (79), Expect = 0.022
 Identities = 18/38 (47%), Positives = 25/38 (65%)
 Frame = +2

Query: 506 QGTVTLCPAHANRRLLNQPALAGLLVVLTAFLDCXTII 619
           +G +TL P H+ R LL+  ALAG++ +L A LD   II
Sbjct: 755 KGLLTLSPFHSERFLLSPTALAGIVTLLHACLDMKPII 792



 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 303 SVIDVLNKYSHDSDNDVAYXAIFAMGLVGAGTXN 404
           S +  L+KY H +DN +   A+  +G+V  G  N
Sbjct: 429 SGLSQLDKYFHSNDNPIIAGALLGVGIVNCGIKN 462


>At4g28470.1 68417.m04073 26S proteasome regulatory subunit,
           putative contains Pfam domain PF01851:
           Proteasome/cyclosome repeat
          Length = 1103

 Score = 64.1 bits (149), Expect = 7e-11
 Identities = 30/72 (41%), Positives = 45/72 (62%)
 Frame = +3

Query: 261 PLAIALCSVSNPQLSVIDVLNKYSHDSDNDVAYXAIFAMGLVGAGTXNXXXXXXXXXXXX 440
           PLA+ L  +SNP+++V+D L++ SHD+D++VA  AI ++GL+GAGT N            
Sbjct: 745 PLALGLLCISNPKVTVMDTLSRLSHDTDSEVAMAAIISLGLIGAGTNNARIAGMLRNLSS 804

Query: 441 YHGKSPVHLFMV 476
           Y+ K    LF V
Sbjct: 805 YYYKDASLLFCV 816



 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 318 LNKYSHDSDNDVAYXAIFAMGLVGAGTXN 404
           L+KY H +DN V   A+  +G+V  G  N
Sbjct: 477 LDKYFHSNDNPVVAGALLGVGIVNCGIKN 505


>At1g66600.1 68414.m07568 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 241

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 527 DTGSPCLAGVTQPLRQPHHEQVHRGLA 447
           D+ S  L+ V  P RQPHHE   R +A
Sbjct: 46  DSFSLALSSVNSPNRQPHHESSSRDMA 72


>At4g23870.1 68417.m03432 expressed protein predicted proteins,
           Arabidopsis thaliana
          Length = 116

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 134 RCKPWRPLASRSSHWPRK 187
           RC+ WRP   R + WP +
Sbjct: 96  RCRKWRPSLERITEWPEE 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.130    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,092,336
Number of Sequences: 28952
Number of extensions: 167831
Number of successful extensions: 523
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)