Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30516
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48009-7|CAA88083.1|  329|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AF039036-5|AAB94164.2|  351|Caenorhabditis elegans Hypothetical ...    28   7.2  
Z81032-5|CAL36491.1|  597|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z81032-2|CAD88213.1|  558|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z81032-1|CAB02719.1|  535|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp ass...    27   9.6  

>Z48009-7|CAA88083.1|  329|Caenorhabditis elegans Hypothetical
           protein AH6.10 protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
 Frame = +2

Query: 47  LLSALFYCYTYLVNWSYGTTIVTYRGAHL*NHSETVLFTFTVICKYLIIFLYYSLAARSG 226
           LL  LFY   Y +++      + YRG  + +   ++L + T    Y  + +  +     G
Sbjct: 59  LLQNLFYTNLYQISYGIEAIGMLYRGFFMLSEPCSILQSETSCAPYFKVLMIGTSGMIFG 118

Query: 227 -SARVFNKNFTIFDVVLFFK*KNTYCGIIIIVRHMLPHRFL*IIMCSTKS*YIILF 391
            +  +  + F  F      K K+ Y G+ I          L +++CST S +IIL+
Sbjct: 119 QTGLLIERAFATFATTYKTK-KSVYIGVCI---------SLIVLVCSTSSGFIILW 164


>AF039036-5|AAB94164.2|  351|Caenorhabditis elegans Hypothetical
           protein E03D2.4 protein.
          Length = 351

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/49 (20%), Positives = 23/49 (46%)
 Frame = +2

Query: 59  LFYCYTYLVNWSYGTTIVTYRGAHL*NHSETVLFTFTVICKYLIIFLYY 205
           ++ CY  +    Y ++++ YR          +L TF  I  Y+ +++ +
Sbjct: 217 IYLCYHLIYKIGYSSSMLLYRSKQQIIMQAVILCTFHAIAAYIYVYMQF 265


>Z81032-5|CAL36491.1|  597|Caenorhabditis elegans Hypothetical
           protein C02F4.2c protein.
          Length = 597

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 537 EATLFPSDIGIIFLKKIWDPY*NSNNVTQYEKNI*NI 427
           +AT FPS I I       D Y N   + +YE N+ NI
Sbjct: 320 QATGFPSLITIFSAPNYLDVYNNKAAILKYENNVMNI 356


>Z81032-2|CAD88213.1|  558|Caenorhabditis elegans Hypothetical
           protein C02F4.2b protein.
          Length = 558

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 537 EATLFPSDIGIIFLKKIWDPY*NSNNVTQYEKNI*NI 427
           +AT FPS I I       D Y N   + +YE N+ NI
Sbjct: 320 QATGFPSLITIFSAPNYLDVYNNKAAILKYENNVMNI 356


>Z81032-1|CAB02719.1|  535|Caenorhabditis elegans Hypothetical
           protein C02F4.2a protein.
          Length = 535

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 537 EATLFPSDIGIIFLKKIWDPY*NSNNVTQYEKNI*NI 427
           +AT FPS I I       D Y N   + +YE N+ NI
Sbjct: 320 QATGFPSLITIFSAPNYLDVYNNKAAILKYENNVMNI 356


>AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp
           associated factor homologprotein 1 protein.
          Length = 767

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 20  LYKNCYTFPLLSALFYCYTYLVN 88
           L++NCY F    A++Y Y Y +N
Sbjct: 718 LFQNCYVFNGAEAVYYKYGYKLN 740


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,320,756
Number of Sequences: 27780
Number of extensions: 309109
Number of successful extensions: 621
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)