Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30516
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    27   0.13 
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   6.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.4  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 12/42 (28%), Positives = 26/42 (61%)
 Frame = +2

Query: 158 FTFTVICKYLIIFLYYSLAARSGSARVFNKNFTIFDVVLFFK 283
           FT T+ C  ++   YY L +++ +  + +  +T+ DVV+++K
Sbjct: 155 FTTTLAC--MMDLHYYPLDSQNCTVEIESYGYTVLDVVMYWK 194


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 415 HAMKNILDIFFIL 453
           H MKNI+D + +L
Sbjct: 282 HKMKNIIDYYLVL 294


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +2

Query: 2   NILSVPLYKNCYTFPLLSALFYCYTYLV 85
           N+  +  Y++ ++FP  + L + YT+ V
Sbjct: 915 NVNMLDTYESVHSFPTETGLPFVYTFNV 942


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,111
Number of Sequences: 438
Number of extensions: 4419
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)