Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30516
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19553.1 68416.m02479 amino acid permease family protein weak...    29   2.2  
At1g65550.1 68414.m07436 xanthine/uracil permease family protein...    29   2.9  
At5g25420.1 68418.m03016 xanthine/uracil permease family protein...    29   3.8  
At2g39350.1 68415.m04830 ABC transporter family protein                27   8.9  

>At3g19553.1 68416.m02479 amino acid permease family protein weak
           similarity to aspartate/glutamate transporter 1 [Mus
           musculus] GI:21322754; contains Pfam profile PF00324:
           Amino acid permease
          Length = 479

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = +2

Query: 35  YTFPLLSALFYCYTYLVNWSYGTTIVTYRGAHL*NHSETVLFTFTVICKYLIIFL 199
           ++FP+L  +      L+  ++  T + YRG H+   S  VL  F+ +C ++++ L
Sbjct: 128 HSFPVLDHVAARVPALLVITFSLTYLNYRGLHIVGFSAVVLAVFS-LCPFVVMAL 181


>At1g65550.1 68414.m07436 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 541

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 427 NILDIFFILGYIIRVLVRIPNFFQKYY 507
           N  +I FILG+   + + IP +F++YY
Sbjct: 431 NSFNIKFILGFSFFMAISIPQYFREYY 457


>At5g25420.1 68418.m03016 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 419

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 427 NILDIFFILGYIIRVLVRIPNFFQKYYTYVTR 522
           N  +  FILG+   + + IP +F++YY  V R
Sbjct: 368 NSFNTKFILGFSFFMAISIPQYFREYYNGVGR 399


>At2g39350.1 68415.m04830 ABC transporter family protein 
          Length = 740

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 47  LLSALFYCYTYLVNWSYGTTIVTYRGAHL*NHSETVLFTFTVICKYLIIFLYYS 208
           L   LFYC   L ++  G++ VT+    +     +V+  +T++   L  FL +S
Sbjct: 561 LTGLLFYCLIILASFWSGSSFVTFLSGVV----PSVMLGYTIVVAILAYFLLFS 610


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,841,351
Number of Sequences: 28952
Number of extensions: 263618
Number of successful extensions: 419
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)