Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30514
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0469 + 24640925-24641081,24641292-24641644,24641870-246420... 30 1.3
08_01_0961 - 9622444-9622928,9623011-9623102,9623862-9624002,962... 30 1.7
05_01_0079 + 531617-531734,531987-532059,532152-532261,532400-53... 29 2.3
07_03_1153 + 24398122-24398747,24399326-24399542,24399741-244002... 29 3.0
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 29 4.0
03_02_0424 + 8338117-8339649,8341274-8341378,8341404-8341574 29 4.0
01_06_0272 - 28065896-28065991,28066069-28066227,28066918-280669... 29 4.0
11_06_0344 + 22540436-22540737,22541304-22543545 28 5.2
08_01_0355 - 3122374-3122520,3122912-3123047,3123124-3123221,312... 28 6.9
>03_05_0469 +
24640925-24641081,24641292-24641644,24641870-24642043,
24642382-24642506,24643011-24643059,24643741-24643899,
24644037-24644219
Length = 399
Score = 30.3 bits (65), Expect = 1.3
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = -1
Query: 344 AISGALMGNSS*RDTNLSLV*ASRSHHFHIRHWPNDA*GL--IPPPAPSXGNEGSALYVQ 171
++ G++MG S ++ + L +RSH I P A G+ P P+ EGS + +
Sbjct: 58 SVQGSVMGASRMDNSYVVLSKQNRSHSHGIPPRPPSA-GIPRAEPNQPTRAMEGSYIVLP 116
Query: 170 PCRA*C*KASPACDGGSQTS 111
P A K S + GG+Q S
Sbjct: 117 PAAASIYKTSASEGGGAQLS 136
>08_01_0961 -
9622444-9622928,9623011-9623102,9623862-9624002,
9624460-9624506,9624581-9624639,9624780-9624940,
9625021-9625196,9625284-9625355,9625820-9625879,
9625997-9626191
Length = 495
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +3
Query: 6 AYASTTLISAV--VRNTTTFKSSITERA-EKCLTALKARCLTSPVACGTGFLTSCATWL 173
+Y S L+S V R K+S++ + C L C S CG F T CA +L
Sbjct: 290 SYLSLPLMSIVKIARECGWRKTSVSSVCHDPCAICLDTECTVSAEGCGHEFCTKCALYL 348
>05_01_0079 +
531617-531734,531987-532059,532152-532261,532400-532543,
532628-532736,532836-533182,533260-533333,533478-533782,
534168-534294,534385-534414,534589-534837
Length = 561
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +1
Query: 346 LEHCIAPFLDRCDADDDHRVTLA--EWGKCLELD 441
L H + FL CD+ D H L+ EW L+LD
Sbjct: 322 LSHKVVVFLSTCDSVDFHHTVLSQLEWSPGLQLD 355
>07_03_1153 +
24398122-24398747,24399326-24399542,24399741-24400220,
24400801-24401007,24401112-24401249,24401317-24401538
Length = 629
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +1
Query: 358 IAPFLDRCDADDDHRVTLAEWGKCLELDELEMEERCDDFNENAEHYL 498
+A +++C A D ++V W C+E+ E E A YL
Sbjct: 273 LASVIEKCKATDQNKVLCPPWSWCVEIAEAAFEANNSKLGLFALEYL 319
>04_03_0582 +
17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 39 VRNTTTFKSSITERAEK-CLTALKARCLTSPVACGTG 146
+RN + + S+ E + C++ K + LT+PVA G G
Sbjct: 400 IRNLNSHQESLEESSSADCISPTKRKALTAPVAKGLG 436
>03_02_0424 + 8338117-8339649,8341274-8341378,8341404-8341574
Length = 602
Score = 28.7 bits (61), Expect = 4.0
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = -1
Query: 344 AISGALMGNSS*RDTNLSLV*ASRSHHFHIRHWPNDA*GL-IPPPAPSXGNEGSALYVQP 168
++ G++MG S ++ + L ++SH I P A I P P+ EGS + + P
Sbjct: 117 SVHGSIMGASRMDNSYVVLSKQNKSHGHGIPPRPPSAAAPHIEPNQPTRAMEGSYIVLPP 176
Query: 167 CRA*C*KASPACDGGSQ 117
A K S + GG+Q
Sbjct: 177 AAASIYKTSTSEGGGAQ 193
>01_06_0272 -
28065896-28065991,28066069-28066227,28066918-28066966,
28067350-28067474,28067834-28068004,28068222-28068571,
28069322-28069478
Length = 368
Score = 28.7 bits (61), Expect = 4.0
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = -1
Query: 344 AISGALMGNSS*RDTNLSLV*ASRSHHFHIRHWPNDA*GL-IPPPAPSXGNEGSALYVQP 168
++ G++MG S ++ + L ++SH I P A I P P+ EGS + + P
Sbjct: 57 SVHGSIMGASRMDNSYVVLSKQNKSHGHGIPPRPPSAAAPHIEPNQPTRAMEGSYIVLPP 116
Query: 167 CRA*C*KASPACDGGSQ 117
A K S + GG+Q
Sbjct: 117 AAASIYKTSTSEGGGAQ 133
>11_06_0344 + 22540436-22540737,22541304-22543545
Length = 847
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 54 TFKSSITERAEKCLTALKARCLTSP 128
T +S ERAE+C + L RC+ P
Sbjct: 299 TLQSGFEERAEECFSQLVQRCIIRP 323
>08_01_0355 -
3122374-3122520,3122912-3123047,3123124-3123221,
3123724-3123801,3123876-3123945,3124452-3124516,
3124606-3124686,3124822-3124926,3125002-3125085,
3125175-3125250,3125358-3125436,3125526-3125646,
3125768-3125827
Length = 399
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 425 LPHSARVTRWSSSASQRSRNGAMQCSRAISGA 330
LP S +V RWSSSA+ +R A R + A
Sbjct: 15 LPASLQVGRWSSSAAMSARPVAFSLRRPVLAA 46
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,680,287
Number of Sequences: 37544
Number of extensions: 352598
Number of successful extensions: 954
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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