Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30514
(623 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_23132| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_58159| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.062
SB_20364| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.8e-16) 34 0.11
SB_56344| Best HMM Match : Kazal_2 (HMM E-Value=1.5e-09) 33 0.25
SB_27392| Best HMM Match : Kazal_1 (HMM E-Value=0.00072) 31 0.76
SB_14476| Best HMM Match : MH1 (HMM E-Value=0) 28 7.1
SB_59779| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.2e-26) 28 7.1
SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0) 27 9.4
SB_2014| Best HMM Match : MAM (HMM E-Value=0) 27 9.4
>SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1080
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +1
Query: 256 IWKWCDLDAQTNDRFVSRHELFPIRAPLMALEHCIAPFLDRCDADDDHRVTLAEWGKCL- 432
+W++ + DA ND+ + HE +++ + E C+ F+D CD D +T EW C
Sbjct: 727 MWEFDNQDANRNDQ-LDEHE---VKSMIDLREPCMVGFMDACDFDGHPGITRHEWNACFP 782
Query: 433 -ELDELEMEE 459
L+ LE+ +
Sbjct: 783 TRLEVLEVSQ 792
>SB_23132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 60
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +1
Query: 259 WKWCDLDAQTNDRFVSRHELFPIRAPLMALEHCIAPFLDRCDADDDHRVTLAEWGKC 429
W++ + DA ND+ + HE +++ + E C+ F+D CD D +T EW C
Sbjct: 1 WEFDNQDANRNDQ-LDEHE---VKSMIDLREPCMVGFMDACDFDGHPGITRHEWNAC 53
>SB_58159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 443
Score = 34.7 bits (76), Expect = 0.062
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +1
Query: 247 QCRIWKWCDLDAQTNDRFVSRHELFPIRAPLMALE-----HCIAPFLDRCDADDDHRVTL 411
Q WK+ LD+ DR ++ E F + M + C L CD D D+ ++L
Sbjct: 369 QVLAWKFHQLDSN-RDRIINSREFFVVSMKKMLGKIKRGRKCSRKLLADCDFDKDNGLSL 427
Query: 412 AEWGKCL 432
EW CL
Sbjct: 428 NEWSYCL 434
>SB_20364| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.8e-16)
Length = 187
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = +1
Query: 256 IWKWCDLDAQTNDRFVSRHELFP-IRAPLMAL--EHCIAPFLDRCDADDDHRVTLAEWGK 426
+WK+ LD D F+ EL +R A+ + C F+ CD + D R++ EW
Sbjct: 50 MWKFNQLDTNA-DYFLEWSELHGFLRMSKKAIHPKKCSKTFVGYCDENQDQRISRNEWYA 108
Query: 427 CLELDELE 450
C + E++
Sbjct: 109 CFGVQEIK 116
>SB_56344| Best HMM Match : Kazal_2 (HMM E-Value=1.5e-09)
Length = 217
Score = 32.7 bits (71), Expect = 0.25
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +1
Query: 256 IWKW-CDLDAQTNDRFVSRHELFPIRAPLMALEHCIAPFLDRCDADDDHRVTLAEWGKCL 432
I KW D + D + E+ I A +M E C A FL CD + ++ +EW C
Sbjct: 145 IAKWEFDRNDLDKDNALEGAEIDNILA-MMIYEPCAAGFLWSCDLNRKQGISRSEWDMCF 203
Query: 433 ELDELEMEER 462
L E E R
Sbjct: 204 TLAEREFPLR 213
>SB_27392| Best HMM Match : Kazal_1 (HMM E-Value=0.00072)
Length = 196
Score = 31.1 bits (67), Expect = 0.76
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +1
Query: 259 WKWCDLDAQTNDRFVSRHELFPIRAPLMALEHCIAPFLDRCDADDDHRVTLAEWGKC 429
W++ +D D +S E+ I PL+ E CI F+ CD + + + EW C
Sbjct: 124 WEFDRVDFN-RDGVLSGREINSIIGPLLFHERCIYGFVMSCDVNKNSVIDKQEWLLC 179
>SB_14476| Best HMM Match : MH1 (HMM E-Value=0)
Length = 131
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Frame = +1
Query: 250 CRIWKWCDLDAQTNDRFVSRHELFPIRA-----PLMALEHCIAPF 369
CR+W+W DL S HEL PI A L E C+ PF
Sbjct: 77 CRLWRWPDLQ--------SHHELRPIEACEFAFSLKKEEVCVNPF 113
>SB_59779| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.2e-26)
Length = 452
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 349 EHCIAPFLDRCDADDDHRVTLAEWGKCLEL 438
E+CI F ++CDA D + +L E +L
Sbjct: 53 ENCITQFFEKCDATKDGQFSLLESANASQL 82
>SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 3312
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 325 IRAPLMALEHCIAPFLDRCDADDDHRVTLAEWGKCLELDE-LEMEERCDDFNENA 486
+ AP ++ +P L A D R L +C+++DE EM RC N+ +
Sbjct: 304 VEAPCVSKSAPTSPDLTLASAGKDTRKRLNYHSQCIDVDECTEMSPRCRCANQKS 358
>SB_2014| Best HMM Match : MAM (HMM E-Value=0)
Length = 2282
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 45 NTTTFKSSITERAEKCLTALKARCLTSPVACG 140
N+ K +I + AEKC + K RC CG
Sbjct: 340 NSLNCKDNIPQNAEKCRFSFKGRCDFESGLCG 371
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,997,773
Number of Sequences: 59808
Number of extensions: 352191
Number of successful extensions: 916
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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