Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30514
         (623 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08580.1 68418.m01021 calcium-binding EF hand family protein ...    29   1.9  
At4g32940.1 68417.m04687 vacuolar processing enzyme gamma / gamm...    29   3.3  
At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membr...    28   5.8  

>At5g08580.1 68418.m01021 calcium-binding EF hand family protein
           contains INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 391

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
 Frame = +1

Query: 283 QTNDRFVSRHELFPIRAPLMALEHCIAP-----FLDRCDADDDHRVTLAE 417
           + +D ++S  EL PI + +   EH  A       + + D+D D R+TLAE
Sbjct: 313 KNDDGYLSDVELLPIISKIHPTEHYYAKQQADYIISQADSDKDRRLTLAE 362


>At4g32940.1 68417.m04687 vacuolar processing enzyme gamma /
           gamma-VPE nearly identical to SP|Q39119 Vacuolar
           processing enzyme, gamma-isozyme precursor (EC 3.4.22.-)
           (Gamma-VPE) {Arabidopsis thaliana}
          Length = 494

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 209 EREAESNLTRRWANAVYGNGAIWTLRPMIDSC 304
           E + +SN   RWA  V G+   W  R   D C
Sbjct: 49  ENDDDSNSGTRWAVLVAGSSGYWNYRHQADIC 80


>At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membrane
           protein (PEX10) identical to zinc-binding peroxisomal
           integral membrane protein GI:4337011 from [Arabidopsis
           thaliana]
          Length = 381

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +3

Query: 45  NTTTFKSSITERAEKCLTALKARCLTSPVACGTGFLTSC-ATWLN 176
           N +T  S+ TE   KC   L  R   +   CG  F  SC   W N
Sbjct: 312 NWSTSDSTSTEAVGKCTLCLSTRQHPTATPCGHVFCWSCIMEWCN 356


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,373,442
Number of Sequences: 28952
Number of extensions: 243581
Number of successful extensions: 617
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)