Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30513
         (484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    28   0.64 
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    25   4.5  
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.0  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   6.0  

>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 28.3 bits (60), Expect = 0.64
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 325 KCTGGKTVSPHSHFLPEI*SNDPICNCIFHSLI 227
           K   G    P   FL  + S++P C C++ SL+
Sbjct: 613 KKLSGSPFQPKRSFLRRLFSSEPSCKCVYASLV 645


>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -1

Query: 460 IKKMFIK***KLIISNELFSFHSVFDLFNFNAFS 359
           +KK FIK   K IIS    SFH++  L     FS
Sbjct: 71  LKKKFIKSLSKKIISYHFISFHTIVVLLLLPPFS 104


>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 602

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 188 LSPELKKNNGPKVD*TVKNAVADRIIR 268
           L  E  + N PK+D TV +A +++++R
Sbjct: 403 LIDEHNETNSPKIDDTVVHACSEKLLR 429


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 268 TIFLGENVNVVKQFYHQCTLLAAKWIDLYYLKM 366
           T+     VN+++QFY   + L  +W+    LK+
Sbjct: 179 TLIRDTRVNILEQFYRSLSPLELRWLIPILLKV 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,745,432
Number of Sequences: 5004
Number of extensions: 32531
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)