Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30513
         (484 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0117 + 14813472-14814113,14814194-14814404,14814552-148148...    28   4.5  
01_06_1710 - 39342842-39343069,39344004-39344165,39344275-393445...    28   4.5  
11_06_0304 - 22206490-22207065                                         27   7.9  

>09_04_0117 +
           14813472-14814113,14814194-14814404,14814552-14814846,
           14815059-14815448,14815528-14815605,14815692-14815926
          Length = 616

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 181 EWIKSRIEKEQWTKGRLNCEKCSCRSDHSTIFLGENVNVVKQFY 312
           E +K   E   W K RLN E C  R D S++ + ++ N    +Y
Sbjct: 342 EKVKEIGEMAIWRK-RLNTESCPSRQDESSVQMCDSTNADDVWY 384


>01_06_1710 -
           39342842-39343069,39344004-39344165,39344275-39344518,
           39344661-39344674
          Length = 215

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = -2

Query: 417 VMNYFLFIQC---LIYLILMHFQII*VYPLG 334
           V++ FLF  C   LIYLI +HF +    PLG
Sbjct: 88  VISMFLFFVCSPILIYLIDLHFHVSKEQPLG 118


>11_06_0304 - 22206490-22207065
          Length = 191

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 301 SPHSHFLPEI*SNDPICNCIFHSLIYLWSI 212
           SP  HFL E+ S +P+C  I  ++ + W I
Sbjct: 4   SPAMHFLLELESQEPVCLLILFTM-FTWFI 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,321,850
Number of Sequences: 37544
Number of extensions: 181735
Number of successful extensions: 341
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)