Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30513
         (484 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC101397-1|AAI01398.1|  416|Homo sapiens ring finger protein 180...    42   9e-04
BC101278-1|AAI01279.1|  416|Homo sapiens ring finger protein 180...    42   9e-04
BC101277-1|AAI01278.1|  416|Homo sapiens ring finger protein 180...    42   9e-04
AL832580-1|CAD89939.1|  615|Homo sapiens hypothetical protein pr...    42   9e-04
AK090756-1|BAC03514.1|  416|Homo sapiens protein ( Homo sapiens ...    42   9e-04

>BC101397-1|AAI01398.1|  416|Homo sapiens ring finger protein 180
           protein.
          Length = 416

 Score = 42.3 bits (95), Expect = 9e-04
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +1

Query: 169 DKLPEWIKSRIEKEQWTKGRLNCEKCSCR 255
           + LPEWI   I+K QWT G+LNC  C  R
Sbjct: 65  EALPEWISCLIQKAQWTVGKLNCPFCGAR 93



 Score = 30.7 bits (66), Expect = 2.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 252 QIGSFDYISGRKCECGETVLPPVHFTSSQVD 344
           ++G F+++S  KC CG+  L  VH + S+ D
Sbjct: 93  RLGGFNFVSTPKCSCGQ--LAAVHLSKSRTD 121


>BC101278-1|AAI01279.1|  416|Homo sapiens ring finger protein 180
           protein.
          Length = 416

 Score = 42.3 bits (95), Expect = 9e-04
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +1

Query: 169 DKLPEWIKSRIEKEQWTKGRLNCEKCSCR 255
           + LPEWI   I+K QWT G+LNC  C  R
Sbjct: 65  EALPEWISCLIQKAQWTVGKLNCPFCGAR 93



 Score = 30.7 bits (66), Expect = 2.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 252 QIGSFDYISGRKCECGETVLPPVHFTSSQVD 344
           ++G F+++S  KC CG+  L  VH + S+ D
Sbjct: 93  RLGGFNFVSTPKCSCGQ--LAAVHLSKSRTD 121


>BC101277-1|AAI01278.1|  416|Homo sapiens ring finger protein 180
           protein.
          Length = 416

 Score = 42.3 bits (95), Expect = 9e-04
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +1

Query: 169 DKLPEWIKSRIEKEQWTKGRLNCEKCSCR 255
           + LPEWI   I+K QWT G+LNC  C  R
Sbjct: 65  EALPEWISCLIQKAQWTVGKLNCPFCGAR 93



 Score = 30.7 bits (66), Expect = 2.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 252 QIGSFDYISGRKCECGETVLPPVHFTSSQVD 344
           ++G F+++S  KC CG+  L  VH + S+ D
Sbjct: 93  RLGGFNFVSTPKCSCGQ--LAAVHLSKSRTD 121


>AL832580-1|CAD89939.1|  615|Homo sapiens hypothetical protein
           protein.
          Length = 615

 Score = 42.3 bits (95), Expect = 9e-04
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +1

Query: 169 DKLPEWIKSRIEKEQWTKGRLNCEKCSCR 255
           + LPEWI   I+K QWT G+LNC  C  R
Sbjct: 88  EALPEWISCLIQKAQWTVGKLNCPFCGAR 116



 Score = 30.7 bits (66), Expect = 2.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 252 QIGSFDYISGRKCECGETVLPPVHFTSSQVD 344
           ++G F+++S  KC CG+  L  VH + S+ D
Sbjct: 116 RLGGFNFVSTPKCSCGQ--LAAVHLSKSRTD 144


>AK090756-1|BAC03514.1|  416|Homo sapiens protein ( Homo sapiens
           cDNA FLJ33437 fis, clone BRACE2021541, weakly similar to
           PROTEIN-TYROSINE PHOSPHATASE YVH1 (EC 3.1.3.48). ).
          Length = 416

 Score = 42.3 bits (95), Expect = 9e-04
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +1

Query: 169 DKLPEWIKSRIEKEQWTKGRLNCEKCSCR 255
           + LPEWI   I+K QWT G+LNC  C  R
Sbjct: 65  EALPEWISCLIQKAQWTVGKLNCPFCGAR 93



 Score = 30.7 bits (66), Expect = 2.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 252 QIGSFDYISGRKCECGETVLPPVHFTSSQVD 344
           ++G F+++S  KC CG+  L  VH + S+ D
Sbjct: 93  RLGGFNFVSTPKCSCGQ--LAAVHLSKSRTD 121


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,041,143
Number of Sequences: 237096
Number of extensions: 1152596
Number of successful extensions: 1923
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1923
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4327667848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)