Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30513
         (484 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22760.1 68418.m02658 PHD finger family protein contains Pfam...    30   0.71 
At2g46380.1 68415.m05773 hypothetical protein weak similarity to...    28   2.9  
At2g43100.1 68415.m05350 aconitase C-terminal domain-containing ...    28   3.8  
At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) conta...    27   6.6  
At4g02670.1 68417.m00362 zinc finger (C2H2 type) family protein ...    27   6.6  
At1g06100.1 68414.m00639 fatty acid desaturase family protein si...    27   6.6  
At4g01760.1 68417.m00229 DC1 domain-containing protein similar t...    27   8.8  
At1g15240.1 68414.m01824 phox (PX) domain-containing protein wea...    27   8.8  

>At5g22760.1 68418.m02658 PHD finger family protein contains Pfam
            domain, PF00628: PHD-finger
          Length = 1566

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = +1

Query: 226  RLNCEKCSCRSDHSTIFLGENV--NVVKQFYH-QCTL 327
            R N EKCSC S H  +FL +++  +  + F H +CT+
Sbjct: 1077 RDNTEKCSCASCHLDVFLRDSITCSTCQGFCHKECTM 1113


>At2g46380.1 68415.m05773 hypothetical protein weak similarity to
           extra-large G-protein [Arabidopsis thaliana] GI:3201682
          Length = 732

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 172 KLPEWIKSRIEKEQWTKGRLNCEKCSCRSDHSTI 273
           KLPE I S   K+Q    R+ C  CSC  D+S +
Sbjct: 379 KLPEKIDSATRKKQ----RMRCGACSCVIDYSFV 408


>At2g43100.1 68415.m05350 aconitase C-terminal domain-containing
           protein contains Pfam profile PF00694: Aconitase
           C-terminal domain
          Length = 256

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = -1

Query: 418 SNELFSFHSVFDLFNFNAFSDNIGLSTWLLVKCTGGKTVSPHSHFLPEI*SNDPICNCIF 239
           S+ L +F S F    FN  +  I  S  +  + T   T+ P +    E  SN+ + N  F
Sbjct: 20  SSSLATFRSPF--LRFNGSTSLIPSSISITSRGTSSPTIIPRAA-ASESDSNEALANTTF 76

Query: 238 HSLIYL 221
           H L Y+
Sbjct: 77  HGLCYV 82


>At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) contains
           Pfam PF02732 : ERCC4 domain; contains TIGRFAM TIGR00596:
           DNA repair protein (rad1); almost identical to 5' repair
           endonuclease (GI:8926611) [Arabidopsis thaliana]
          Length = 956

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 297 GETVLPPVHFTSSQVDRPIL 356
           G   LPPVHF + + D+PIL
Sbjct: 593 GAKKLPPVHFYALESDQPIL 612


>At4g02670.1 68417.m00362 zinc finger (C2H2 type) family protein
           similar to potato PCP1 zinc finger protein, GenBank
           accession number X82328 contains Pfam domain, PF00096:
           Zinc finger, C2H2 type
          Length = 402

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 175 LPEWIKSRIEKEQWTKGRLNCEKCSCRSDHSTIFLGENVNVVKQF 309
           LP  +K +  KEQ  K    C + +C   H +  LG+   + K F
Sbjct: 106 LPWKLKQKNTKEQQKKKVYVCPETNCAHHHPSRALGDLTGIKKHF 150


>At1g06100.1 68414.m00639 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase (ADS1)
           GI:2970034 from [Arabidopsis thaliana]
          Length = 299

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 241 FHSLIYLWSIVLFQFWT*SIRAICLPGX*ITFLMS*LLHFCGS 113
           F +LIYLW  + +  WT     +   G   T+L++   H CGS
Sbjct: 181 FWTLIYLWGGLPYLTWTVGFGGVI--GYHGTWLVNSACHICGS 221


>At4g01760.1 68417.m00229 DC1 domain-containing protein similar to
           T15B16.10 similar to A. thaliana CHP-rich proteins
           encoded by T10M13, GenBank accession number AF001308
          Length = 667

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 202 EKEQWTKGRLNCEKCSCRSDHSTIFLGENV 291
           +K  WT G  +C++CS    HS     E+V
Sbjct: 325 QKVDWTCGGYSCQRCSTYIAHSKCATREDV 354


>At1g15240.1 68414.m01824 phox (PX) domain-containing protein weak
           similarity to SP|Q9Y5W8 Sorting nexin 13 {Homo sapiens};
           contains Pfam profiles PF00787: PX domain, PF02194: PXA
           domain
          Length = 706

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 309 LPPVHFTSSQVDRPILSE 362
           LPP HF S+ VD P++ E
Sbjct: 671 LPPKHFLSTGVDIPVIQE 688


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,825,934
Number of Sequences: 28952
Number of extensions: 161358
Number of successful extensions: 391
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)