Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30511
(693 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4KTB1 Cluster: S30-ubiquitin-like; n=4; Metazoa|Rep: S... 51 3e-05
UniRef50_Q18231 Cluster: Ribosomal protein, small subunit protei... 48 2e-04
UniRef50_O42952 Cluster: 40S ribosomal protein S30; n=37; Eukary... 45 0.002
UniRef50_UPI0000F33F66 Cluster: UPI0000F33F66 related cluster; n... 44 0.004
UniRef50_P49689 Cluster: 40S ribosomal protein S30; n=4; Magnoli... 44 0.004
UniRef50_Q4Q7P0 Cluster: 40S ribosomal protein S30, putative; n=... 42 0.011
UniRef50_A1DL63 Cluster: Ribosomal S30/ubiquitin fusion; n=2; Tr... 42 0.011
UniRef50_P62861 Cluster: 40S ribosomal protein S30; n=74; root|R... 42 0.019
UniRef50_Q9W6Y0 Cluster: 40S ribosomal protein S30; n=30; Eukary... 40 0.044
UniRef50_A0CN43 Cluster: Chromosome undetermined scaffold_22, wh... 39 0.13
UniRef50_UPI0001509BA5 Cluster: Ribosomal protein S30 containing... 38 0.23
UniRef50_UPI00004990C9 Cluster: 40S ribosomal protein S30; n=2; ... 35 2.2
UniRef50_A0RV16 Cluster: Ribosomal protein S30E; n=2; Thermoprot... 34 2.9
UniRef50_Q3LW43 Cluster: Ribosomal protein S30; n=1; Bigelowiell... 33 5.0
UniRef50_Q244X4 Cluster: Putative uncharacterized protein; n=1; ... 33 6.6
>UniRef50_Q4KTB1 Cluster: S30-ubiquitin-like; n=4; Metazoa|Rep:
S30-ubiquitin-like - Suberites domuncula (Sponge)
Length = 134
Score = 50.8 bits (116), Expect = 3e-05
Identities = 31/71 (43%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = -2
Query: 248 QIKERIRTLAAVGDEDLTLSLCGAPXXXXXXXXXXXXXXXXLT--VPLLGGKVHGSLARA 75
Q+K + + ED LS G P L+ V ++GGKVHGSLARA
Sbjct: 23 QLKSELVLSEGITVEDQVLSYGGVPLEDDTLVCEIVPELATLSLAVRVVGGKVHGSLARA 82
Query: 74 GKVKGQTPKVE 42
GKV+GQTPKVE
Sbjct: 83 GKVRGQTPKVE 93
>UniRef50_Q18231 Cluster: Ribosomal protein, small subunit protein
30; n=3; Caenorhabditis|Rep: Ribosomal protein, small
subunit protein 30 - Caenorhabditis elegans
Length = 130
Score = 48.0 bits (109), Expect = 2e-04
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = -2
Query: 113 LLGGKVHGSLARAGKVKGQTPKVE 42
LLGGKVHGSLARAGKV+ QTPKV+
Sbjct: 68 LLGGKVHGSLARAGKVRAQTPKVD 91
>UniRef50_O42952 Cluster: 40S ribosomal protein S30; n=37;
Eukaryota|Rep: 40S ribosomal protein S30 -
Schizosaccharomyces pombe (Fission yeast)
Length = 61
Score = 44.8 bits (101), Expect = 0.002
Identities = 20/21 (95%), Positives = 20/21 (95%)
Frame = -2
Query: 104 GKVHGSLARAGKVKGQTPKVE 42
GKVHGSLARAGKVK QTPKVE
Sbjct: 2 GKVHGSLARAGKVKSQTPKVE 22
>UniRef50_UPI0000F33F66 Cluster: UPI0000F33F66 related cluster; n=3;
Laurasiatheria|Rep: UPI0000F33F66 UniRef100 entry - Bos
Taurus
Length = 128
Score = 44.0 bits (99), Expect = 0.004
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = -2
Query: 113 LLGGKVHGSLARAGKVKGQTPKVE 42
+LGGKVHGSL AGKV+GQTPKV+
Sbjct: 68 MLGGKVHGSLDCAGKVRGQTPKVD 91
>UniRef50_P49689 Cluster: 40S ribosomal protein S30; n=4;
Magnoliophyta|Rep: 40S ribosomal protein S30 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 62
Score = 44.0 bits (99), Expect = 0.004
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = -2
Query: 104 GKVHGSLARAGKVKGQTPKV 45
GKVHGSLARAGKV+GQTPKV
Sbjct: 2 GKVHGSLARAGKVRGQTPKV 21
>UniRef50_Q4Q7P0 Cluster: 40S ribosomal protein S30, putative; n=4;
Leishmania|Rep: 40S ribosomal protein S30, putative -
Leishmania major
Length = 66
Score = 42.3 bits (95), Expect = 0.011
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = -2
Query: 104 GKVHGSLARAGKVKGQTPKV 45
GK+HGSLARAGKVK QTPKV
Sbjct: 2 GKIHGSLARAGKVKNQTPKV 21
>UniRef50_A1DL63 Cluster: Ribosomal S30/ubiquitin fusion; n=2;
Trichocomaceae|Rep: Ribosomal S30/ubiquitin fusion -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 78
Score = 42.3 bits (95), Expect = 0.011
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = -2
Query: 104 GKVHGSLARAGKVKGQTPKVE 42
GKVHGSLARAGKVK TPKVE
Sbjct: 2 GKVHGSLARAGKVKSATPKVE 22
>UniRef50_P62861 Cluster: 40S ribosomal protein S30; n=74; root|Rep:
40S ribosomal protein S30 - Homo sapiens (Human)
Length = 59
Score = 41.5 bits (93), Expect = 0.019
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = -2
Query: 101 KVHGSLARAGKVKGQTPKV 45
KVHGSLARAGKV+GQTPKV
Sbjct: 1 KVHGSLARAGKVRGQTPKV 19
>UniRef50_Q9W6Y0 Cluster: 40S ribosomal protein S30; n=30;
Eukaryota|Rep: 40S ribosomal protein S30 - Oryzias
latipes (Medaka fish) (Japanese ricefish)
Length = 59
Score = 40.3 bits (90), Expect = 0.044
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = -2
Query: 101 KVHGSLARAGKVKGQTPKVE 42
KVHGSLARAGKV+GQTP V+
Sbjct: 1 KVHGSLARAGKVRGQTPNVD 20
>UniRef50_A0CN43 Cluster: Chromosome undetermined scaffold_22, whole
genome shotgun sequence; n=6; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_22,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 92
Score = 38.7 bits (86), Expect = 0.13
Identities = 15/21 (71%), Positives = 20/21 (95%)
Frame = -2
Query: 104 GKVHGSLARAGKVKGQTPKVE 42
GK+HG+LA+AGKV+ QTPK+E
Sbjct: 2 GKLHGTLAKAGKVRKQTPKIE 22
>UniRef50_UPI0001509BA5 Cluster: Ribosomal protein S30 containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal protein S30 containing protein - Tetrahymena
thermophila SB210
Length = 80
Score = 37.9 bits (84), Expect = 0.23
Identities = 15/21 (71%), Positives = 20/21 (95%)
Frame = -2
Query: 104 GKVHGSLARAGKVKGQTPKVE 42
G++HG+LA+AGKV+ QTPKVE
Sbjct: 2 GRMHGTLAKAGKVRKQTPKVE 22
>UniRef50_UPI00004990C9 Cluster: 40S ribosomal protein S30; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S30 - Entamoeba histolytica HM-1:IMSS
Length = 64
Score = 34.7 bits (76), Expect = 2.2
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -2
Query: 104 GKVHGSLARAGKVKGQTPKVE 42
GKVHG L RAGKV+ QT K E
Sbjct: 2 GKVHGGLTRAGKVRNQTKKPE 22
>UniRef50_A0RV16 Cluster: Ribosomal protein S30E; n=2;
Thermoprotei|Rep: Ribosomal protein S30E - Cenarchaeum
symbiosum
Length = 60
Score = 34.3 bits (75), Expect = 2.9
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = -2
Query: 95 HGSLARAGKVKGQTPKVE 42
HGSL +AGKV+ QTPK+E
Sbjct: 4 HGSLTKAGKVRSQTPKIE 21
>UniRef50_Q3LW43 Cluster: Ribosomal protein S30; n=1; Bigelowiella
natans|Rep: Ribosomal protein S30 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 55
Score = 33.5 bits (73), Expect = 5.0
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = -2
Query: 104 GKVHGSLARAGKVKGQT 54
GKVHGSL RAGKV+ QT
Sbjct: 2 GKVHGSLTRAGKVRNQT 18
>UniRef50_Q244X4 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 3713
Score = 33.1 bits (72), Expect = 6.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 504 QKNDKNCGKESVRKSREKSCRNCSNTNTNASGVC 605
QK + CGK + K+C C ++ TN G+C
Sbjct: 2464 QKKCEPCGKNCINCDDSKNCTLCDDSYTNVEGIC 2497
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 486,489,359
Number of Sequences: 1657284
Number of extensions: 7886389
Number of successful extensions: 20487
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 19744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20473
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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