Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30511
         (693 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   1.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.1  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    22   5.5  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 300 SEGNRHTSWTSMARSHWSDQG 238
           S  NRH++W    +SHW ++G
Sbjct: 354 SASNRHSAW----QSHWLNKG 370


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 439  AFYGFCDGLRRDFTGNARNSSHAKATYTVHGD 344
            A+Y  C+ +R       R++S A   +  HGD
Sbjct: 905  AYYEICNRIRNQRWIVNRDTSGATGPFAYHGD 936


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -3

Query: 379 SHAKATYTVHGDFETWLIRFYNMQLHIRGQSTHVLDVNGQESLVRSRNAFV 227
           S A  ++TV  D    L R   + LH++   T  L+ +  + +V+  + F+
Sbjct: 157 SSAGGSFTVTQDRGEPLGRGTKIVLHMKEDQTEFLEEHKIKEIVKKHSQFI 207


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,463
Number of Sequences: 336
Number of extensions: 1994
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)