Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30511
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein S30|S...    45   1e-05
SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein S30|Schizosa...    45   1e-05
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    26   4.5  
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    25   7.9  

>SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 61

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 20/21 (95%), Positives = 20/21 (95%)
 Frame = -2

Query: 104 GKVHGSLARAGKVKGQTPKVE 42
           GKVHGSLARAGKVK QTPKVE
Sbjct: 2   GKVHGSLARAGKVKSQTPKVE 22


>SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 61

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 20/21 (95%), Positives = 20/21 (95%)
 Frame = -2

Query: 104 GKVHGSLARAGKVKGQTPKVE 42
           GKVHGSLARAGKVK QTPKVE
Sbjct: 2   GKVHGSLARAGKVKSQTPKVE 22


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -3

Query: 370 KATYTVHGDFETWLIRFYNMQ---LHIRGQSTHVLD 272
           KA YT + DFE    R Y+++   LH+     H+L+
Sbjct: 538 KAIYTTYTDFEDLDHRLYSIKKCLLHLHSTPLHILE 573


>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = -2

Query: 338 NLVDKILQYAVAYQRAIDTRPGRQWPGVIGQIKERIRTLAAVGDEDLTLSLCGA 177
           N +D  L+  + Y   +   PG++  GV+  + +++     VGD  + L+  GA
Sbjct: 42  NYIDTYLRTGL-YTAPLPYIPGKEAAGVVAAVGDKVEADFKVGDRVVYLTPFGA 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,982,839
Number of Sequences: 5004
Number of extensions: 31452
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)