Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30511
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0507 + 3655570-3655573,3655648-3655832                           44   1e-04
10_06_0161 + 11344712-11344877,11345870-11346084                       29   4.6  

>06_01_0507 + 3655570-3655573,3655648-3655832
          Length = 62

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 19/20 (95%), Positives = 20/20 (100%)
 Frame = -2

Query: 104 GKVHGSLARAGKVKGQTPKV 45
           GKVHGSLARAGKV+GQTPKV
Sbjct: 2   GKVHGSLARAGKVRGQTPKV 21


>10_06_0161 + 11344712-11344877,11345870-11346084
          Length = 126

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 293 AIDTRPGRQWPGVIGQIKERIRTLAAVGDEDLTLSLCG 180
           A+DT  GR+W G+ G   E +     +GD  L L L G
Sbjct: 38  AVDTGGGRKWRGLGGGGAELVLRTLGIGDMVLFLVLVG 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,490,293
Number of Sequences: 37544
Number of extensions: 230827
Number of successful extensions: 647
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)