Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30511
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal prote...    48   6e-06
U80843-9|AAB37969.1|  392|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical ...    28   5.5  
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z99710-12|CAI79158.1|  333|Caenorhabditis elegans Hypothetical p...    27   9.6  
Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AL034393-28|CAI79175.1|  333|Caenorhabditis elegans Hypothetical...    27   9.6  

>U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 30 protein.
          Length = 130

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 21/24 (87%), Positives = 23/24 (95%)
 Frame = -2

Query: 113 LLGGKVHGSLARAGKVKGQTPKVE 42
           LLGGKVHGSLARAGKV+ QTPKV+
Sbjct: 68  LLGGKVHGSLARAGKVRAQTPKVD 91


>U80843-9|AAB37969.1|  392|Caenorhabditis elegans Hypothetical
           protein C32B5.14 protein.
          Length = 392

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 263 AIDVQDVCRLPSDMQLHIVKSYQPSFKIA 349
           +I    V R+PS ++  I   Y PSFKIA
Sbjct: 200 SIGCDTVLRVPSTLKFRIENLYTPSFKIA 228


>AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical
           protein C36B7.5b protein.
          Length = 1148

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 513 DKNCGKESVRKSREKSCRNCSNTN 584
           D+ CG+ES+R  R + C N  N N
Sbjct: 506 DERCGEESIR-LRNRKCMNAENNN 528


>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
           protein C36B7.5a protein.
          Length = 1121

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 513 DKNCGKESVRKSREKSCRNCSNTN 584
           D+ CG+ES+R  R + C N  N N
Sbjct: 506 DERCGEESIR-LRNRKCMNAENNN 528


>Z99710-12|CAI79158.1|  333|Caenorhabditis elegans Hypothetical
           protein Y18D10A.22 protein.
          Length = 333

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 413 SPGLYWQR*KLLPCQSHLYRPWRF*NLVDKILQ 315
           S  ++W   + +  + H    W+F NLV K+LQ
Sbjct: 41  SSEMFWNLLESIQLEKHPVMTWKFCNLVHKLLQ 73


>Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical protein
            F33H2.5 protein.
          Length = 2144

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 195  SKVFITNCSKSTNAFLDLTNDSWPLTSRTC 284
            S VF  +CS+++N FL  T++   LT  TC
Sbjct: 2026 SNVFCNSCSQASNVFLSSTDEI--LTCATC 2053


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 321  FTICSCISEGNRHTSWTSMARSHWSDQ 241
            F I  C   G  HT WT   RS  S++
Sbjct: 4931 FIIICCFENGTSHTEWTGTLRSLASEK 4957


>AL034393-28|CAI79175.1|  333|Caenorhabditis elegans Hypothetical
           protein Y18D10A.22 protein.
          Length = 333

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 413 SPGLYWQR*KLLPCQSHLYRPWRF*NLVDKILQ 315
           S  ++W   + +  + H    W+F NLV K+LQ
Sbjct: 41  SSEMFWNLLESIQLEKHPVMTWKFCNLVHKLLQ 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,303,078
Number of Sequences: 27780
Number of extensions: 192211
Number of successful extensions: 500
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)