Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30511
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56670.1 68418.m07074 40S ribosomal protein S30 (RPS30C)            44   1e-04
At4g29390.1 68417.m04198 40S ribosomal protein S30 (RPS30B) RIBO...    44   1e-04
At2g19750.1 68415.m02307 40S ribosomal protein S30 (RPS30A)            44   1e-04
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein...    27   8.9  

>At5g56670.1 68418.m07074 40S ribosomal protein S30 (RPS30C) 
          Length = 62

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 19/20 (95%), Positives = 20/20 (100%)
 Frame = -2

Query: 104 GKVHGSLARAGKVKGQTPKV 45
           GKVHGSLARAGKV+GQTPKV
Sbjct: 2   GKVHGSLARAGKVRGQTPKV 21


>At4g29390.1 68417.m04198 40S ribosomal protein S30 (RPS30B)
           RIBOSOMAL PROTEIN S30 - Arabidopsis
           thaliana,PID:e1358183
          Length = 62

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 19/20 (95%), Positives = 20/20 (100%)
 Frame = -2

Query: 104 GKVHGSLARAGKVKGQTPKV 45
           GKVHGSLARAGKV+GQTPKV
Sbjct: 2   GKVHGSLARAGKVRGQTPKV 21


>At2g19750.1 68415.m02307 40S ribosomal protein S30 (RPS30A)
          Length = 62

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 19/20 (95%), Positives = 20/20 (100%)
 Frame = -2

Query: 104 GKVHGSLARAGKVKGQTPKV 45
           GKVHGSLARAGKV+GQTPKV
Sbjct: 2   GKVHGSLARAGKVRGQTPKV 21


>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 268

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 489 QCN*LQKNDKNCGKESVRKSREKSCRNCSNTNTNAS 596
           QC     + KNC +++   S +K C NC +T  + S
Sbjct: 103 QCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLS 138


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,676,882
Number of Sequences: 28952
Number of extensions: 175234
Number of successful extensions: 486
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)