Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30510
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    27   2.2  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    27   2.9  
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p...    27   3.9  
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    26   6.8  
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||...    25   9.0  

>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +1

Query: 85  VQLKMGPQFQNLPM--RDGVDWQINKTAYLWKDESNFLLSTKFLDWFK 222
           + L    +F   P+   + VD++I  T YL+    + L    FLDW +
Sbjct: 317 ITLSSSIEFTEFPLGFNENVDFEILGTVYLFLRTPSILNRLNFLDWHR 364


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = +1

Query: 487 PNKEAANKPTKSGPWRISMQNQERLLMHKTNN--LRPALRLMKKLRDAQGMNAIASYFIK 660
           P +E + KP  +G W++ M      +  KT    +      + K+   + +N IA   +K
Sbjct: 149 PPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINTPHNPLGKIFSEEELNEIADLVLK 208


>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -1

Query: 479 HKLPGTFAAIRGYLPVLLRDRPSIFWKLQRRHQ 381
           H  PG    I G   + LRD PS+  KL R+HQ
Sbjct: 103 HHCPGVPCLIVG-TQIDLRDDPSVQQKLARQHQ 134


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/68 (20%), Positives = 32/68 (47%)
 Frame = +3

Query: 519 VRSVAHIHAEPGEALDAQDQ*SATSLATDEEVERRARHERDRQLLHQNIVSV*NSQS*RH 698
           ++++++I+ +   + + + +        + + E+  RHE   Q L + I  + N    R 
Sbjct: 356 IKNISNINCKEAYSTNNEGELDDILTTLESDREQLRRHEEHSQKLLKFIEEIRNDYEERI 415

Query: 699 HVLEQEQS 722
           H LE + S
Sbjct: 416 HALESQNS 423


>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 753 RDTINLKQFRRTVLAPKRDVVNFDYFKQKQC 661
           R+  +LKQ +RTVL P R  ++ +Y K   C
Sbjct: 89  RNQRSLKQVKRTVLLPHRSPIH-EYLKLIVC 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,464,999
Number of Sequences: 5004
Number of extensions: 77017
Number of successful extensions: 195
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)