Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30510
(764 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0799 + 25334460-25334994,25335060-25335236,25335325-253354... 30 1.8
04_01_0599 + 7871933-7872004,7872696-7873168,7873257-7873334,787... 29 3.1
08_01_0105 + 756998-757225,757311-758597 29 5.4
05_01_0213 - 1606383-1606816,1607695-1608355 29 5.4
06_03_1174 - 28164003-28164350,28164504-28164680,28165147-28166178 28 7.1
04_01_0295 + 3926329-3926958 28 7.1
11_06_0114 - 20284840-20284844,20285280-20285402,20285504-20287937 28 9.4
05_01_0187 + 1349725-1352238 28 9.4
03_01_0437 + 3390099-3392570 28 9.4
>01_05_0799 +
25334460-25334994,25335060-25335236,25335325-25335447,
25335559-25335624,25335717-25336685,25336791-25336912,
25337156-25337549,25337888-25338009,25338253-25338646,
25338983-25339104,25339348-25339830,25340291-25340960,
25341713-25342224,25342484-25342540
Length = 1581
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +3
Query: 603 DEEVERRARHERDRQLLHQNIVSV*NSQS*RHHVLEQEQSFETV 734
+EE R+ R R R+ NIVS NS+S H+V ++ TV
Sbjct: 146 NEERNRKQREYRARKKAESNIVSGSNSESTNHNVSPYGTTYSTV 189
>04_01_0599 +
7871933-7872004,7872696-7873168,7873257-7873334,
7873446-7873665
Length = 280
Score = 29.5 bits (63), Expect = 3.1
Identities = 24/102 (23%), Positives = 44/102 (43%)
Frame = +1
Query: 430 STGKYPRIAAKVPGSLCGKPNKEAANKPTKSGPWRISMQNQERLLMHKTNNLRPALRLMK 609
+T K+P+ A P + P AA G W++ ++ + LL PAL
Sbjct: 79 ATPKWPQRLAVAPERIATVPGSSAAAFKHDDGKWKLRTKHYKALL--------PALG-SD 129
Query: 610 KLRDAQGMNAIASYFIKTLFLFEIVKVDDITFWSKNSPSKLF 735
K+R+ MN + F +L + ++ ++ + NS +F
Sbjct: 130 KIRNVMDMNTVYGGFAASLIKDPVWVMNVVSSYGPNSLGVVF 171
>08_01_0105 + 756998-757225,757311-758597
Length = 504
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Frame = -2
Query: 625 ARLSTSSSVARLVADYWSCASRASPGSAWICATD-RTSSVCW-RP-----PYSVFRTSCQ 467
A L + + R ADY A+ A+PG+ ++ D CW RP P SV+R +
Sbjct: 116 AELPNARAAVRWGADYLLKAATATPGALYVQVADPNQDHRCWERPEDMDTPRSVYRVTAD 175
Query: 466 VP 461
P
Sbjct: 176 KP 177
>05_01_0213 - 1606383-1606816,1607695-1608355
Length = 364
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 66 TQTCRLCSTEN-GPSVPKPTDEGRSRLADQQNCLSVERRIQ 185
T T CS+E GPS P PT E RLA+ Q S R++Q
Sbjct: 200 TTTTSSCSSEEVGPSSPSPTSE-EIRLANNQQ--SSRRKLQ 237
>06_03_1174 - 28164003-28164350,28164504-28164680,28165147-28166178
Length = 518
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -3
Query: 222 FKPIQKFGG*QKIGFVFPQISSF-VDLPIDSVPHR*VLELRAHFQLNIAGMS 70
FKP Q+F +I F F I S+ + I P+ VL+LR+ F L+ +S
Sbjct: 197 FKPQQRFNELSEICFHFVSIESYMLRNVITRCPNLRVLDLRSCFDLDAVAIS 248
>04_01_0295 + 3926329-3926958
Length = 209
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +1
Query: 37 NRNESDIKFEPR--HAGYVQLKMGPQFQNL 120
N E +F+PR H V++K GP QN+
Sbjct: 142 NGKEEKFEFQPRTKHCSMVRIKYGPNLQNI 171
>11_06_0114 - 20284840-20284844,20285280-20285402,20285504-20287937
Length = 853
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 396 KFPENRWPITKQYRQIPPNCRKGTWQLVR 482
K+ N WP T+++R++P N G W++ R
Sbjct: 531 KYACNGWP-TRKFRKMPKNDCNGHWKMSR 558
>05_01_0187 + 1349725-1352238
Length = 837
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 396 KFPENRWPITKQYRQIPPNCRKGTWQLVR 482
K+ N WP T+++R++P N G W++ R
Sbjct: 494 KYACNGWP-TRKFRKMPKNDCNGHWKMSR 521
>03_01_0437 + 3390099-3392570
Length = 823
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 424 RSSTGKYPRIAAKVPGSLCGKPNKEAANKPTKSGPWRISMQNQER-LLMHKTNNLRPALR 600
R +G++ + +P L E + + PWR +M N+ER +++ + + R A+
Sbjct: 69 RKKSGRWVKYGGSIPAMLEALERNEDIGEALR--PWRDTMSNRERTIILKEQKDWRRAVE 126
Query: 601 LMKKLR 618
+ R
Sbjct: 127 IFNWFR 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,971,088
Number of Sequences: 37544
Number of extensions: 530039
Number of successful extensions: 1542
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1541
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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