Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30510
(764 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25577| Best HMM Match : Mab-21 (HMM E-Value=1e-05) 36 0.027
SB_49274| Best HMM Match : p450 (HMM E-Value=0) 34 0.14
SB_51861| Best HMM Match : RVT_1 (HMM E-Value=1.2e-10) 32 0.44
SB_14570| Best HMM Match : Mab-21 (HMM E-Value=0.00069) 31 1.0
SB_6743| Best HMM Match : Mab-21 (HMM E-Value=0.086) 31 1.0
SB_3202| Best HMM Match : AFP (HMM E-Value=2.9) 30 2.3
SB_12751| Best HMM Match : MM_CoA_mutase (HMM E-Value=0) 29 3.1
SB_38893| Best HMM Match : UMPH-1 (HMM E-Value=2.3e-21) 29 4.1
SB_11982| Best HMM Match : GST_N (HMM E-Value=7.9e-15) 29 4.1
SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_29517| Best HMM Match : Transposase_33 (HMM E-Value=6.9) 28 9.5
>SB_25577| Best HMM Match : Mab-21 (HMM E-Value=1e-05)
Length = 492
Score = 36.3 bits (80), Expect = 0.027
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = +1
Query: 490 NKEAANKPTKSGPWRISMQNQERLLM-HKTNNLRPALRLMKKL--RDAQGMNAIASYFIK 660
NK PT WR+S N E+ L H T +R + K + ++ N ++SY++K
Sbjct: 359 NKSPFKNPTGL-EWRLSFSNAEKTLFAHMTELMRHCFCVFKGIYYQELTTPNVLSSYYLK 417
Query: 661 TLFLFE 678
T+FL++
Sbjct: 418 TIFLWK 423
>SB_49274| Best HMM Match : p450 (HMM E-Value=0)
Length = 568
Score = 33.9 bits (74), Expect = 0.14
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 145 QINKTAYLWKDESNFLLSTKFLDWFKSVVKRALNKFEQKTASL 273
+I+K +++ SN T FL W + +K+ L+KFE+ +L
Sbjct: 261 EISKAGRKFQESSNLAFLTDFLPWTRLALKKPLDKFEENIRAL 303
>SB_51861| Best HMM Match : RVT_1 (HMM E-Value=1.2e-10)
Length = 1318
Score = 32.3 bits (70), Expect = 0.44
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +1
Query: 16 CFHEKTNNRNESDIKFEPRHAGYVQLKMGPQFQNLPMRDGVDWQINKTAYL 168
CF +KT E ++ +P Q M P N P+R+G ++NK AYL
Sbjct: 742 CFQDKTGEPIEFKLEMDPEATPVAQRPMLPTTCNNPLRNGSIRELNK-AYL 791
>SB_14570| Best HMM Match : Mab-21 (HMM E-Value=0.00069)
Length = 639
Score = 31.1 bits (67), Expect = 1.0
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +1
Query: 529 WRISMQNQE-RLLMHKTNNLRPALRLMKKLRDAQGMNAIASYFIKTLFLFEIVKVDDITF 705
WR+S E RL T R L L+K ++ I+SYF+K L +E + +F
Sbjct: 257 WRMSFSLAENRLAQSLTPVQRHTLVLLKIIKKVYFPEVISSYFLKNLLFWECENNGE-SF 315
Query: 706 WSKNSPSK 729
W + K
Sbjct: 316 WKGTTSGK 323
>SB_6743| Best HMM Match : Mab-21 (HMM E-Value=0.086)
Length = 412
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Frame = +3
Query: 312 SQSGPAETLIITNKS------KGFSLSVDLVPALKFPENRWP 419
+ +GPA TL+IT + K LS+DLVPAL F + P
Sbjct: 204 TDNGPATTLVITYREGDKPQEKNRRLSIDLVPALLFKDKTKP 245
>SB_3202| Best HMM Match : AFP (HMM E-Value=2.9)
Length = 460
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 678 FKQKQCFDEVTG-DRVHALRVSQLLHQSQGWSQIIGLVHQEPLLVLHGYAPRTGLRRFVG 502
F + Q FDE+ G D +H Q ++ QG++++ G + LHG+ G G
Sbjct: 34 FDELQGFDELHGFDELHGFNELQGFNELQGFNELQGFDELQGFDELHGFDELHGFNELQG 93
>SB_12751| Best HMM Match : MM_CoA_mutase (HMM E-Value=0)
Length = 429
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = -1
Query: 476 KLPGTFAAIRGYLPVLLRDRPSIFWKLQRRHQVHA*AKSFRFIRNDQRLRRTGLRMGYDV 297
+LPG F RG P + +RP W +++ +S +F R++ + + GL + +D+
Sbjct: 138 ELPGKFPFTRGPNPTMYTNRP---WTIRQYAGFSTVEESNKFYRDNIKAGQQGLSVAFDL 194
Query: 296 LNASHVVY 273
A+H Y
Sbjct: 195 --ATHRGY 200
>SB_38893| Best HMM Match : UMPH-1 (HMM E-Value=2.3e-21)
Length = 372
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 115 NLPMRDGVDWQINKTAYLWKDESNFLLSTKFLDWFKSVVKRALNKFEQKT 264
N+ +RDGV+W KT K+ F+LS D + V+K+ + F+ T
Sbjct: 212 NIGLRDGVEWLFVKT--YEKNVPVFILSGGLGDIIEEVIKQQSHLFDNVT 259
>SB_11982| Best HMM Match : GST_N (HMM E-Value=7.9e-15)
Length = 221
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 631 MNAIASYFIKTLFLFEIVKVDDITFWSKNSPSKLF 735
MN A+Y I TLFLF++ D I F + ++ +F
Sbjct: 154 MNEQATYQITTLFLFQLTYADIILFSTSDTFESMF 188
>SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2463
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 755 SETPST*NSFEGLFLLQNVMSSTLTISNRN 666
S +P T +FEG+F L + TI NRN
Sbjct: 470 SHSPVTDQNFEGIFALLESFGNVQTILNRN 499
>SB_29517| Best HMM Match : Transposase_33 (HMM E-Value=6.9)
Length = 201
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 312 SQSGPAETLIITNKSKGFSLSVDLVPALKFPENR 413
++ GPA TL + K L +DLVPAL F +++
Sbjct: 3 NKKGPAATLNVQATDK--ELDIDLVPALLFKDDK 34
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,326,072
Number of Sequences: 59808
Number of extensions: 599656
Number of successful extensions: 2046
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2046
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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