Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30510
         (764 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    31   0.016
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    25   0.77 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    25   0.77 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   5.4  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   9.5  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   9.5  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 30.7 bits (66), Expect = 0.016
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 520 TSSVCWRPPYSVFRTSCQVPLRQFGGICRYCFV 422
           T  V W PP ++F++SC++ +R F    + CF+
Sbjct: 130 TGKVLWTPP-AIFKSSCEIDVRYFPFDQQTCFM 161


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 172 KDESNFLLSTKFLDWFKSVVKRALNKFEQKTASL-YTTWE 288
           KD+++FL   +FL    ++ K  +++ E++  +  YT WE
Sbjct: 397 KDQASFLERERFLGIINNIFKN-MSQIEREAITFQYTDWE 435


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 172 KDESNFLLSTKFLDWFKSVVKRALNKFEQKTASL-YTTWE 288
           KD+++FL   +FL    ++ K  +++ E++  +  YT WE
Sbjct: 397 KDQASFLERERFLGIINNIFKN-MSQIEREAITFQYTDWE 435


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 695 SSTLTISNRNNVLMK 651
           S T+ I+NRNN  MK
Sbjct: 484 SYTIVINNRNNTSMK 498


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +2

Query: 524 VRGAYPCRTRRGS*CTRPIICDQPCD 601
           +  A   R RR    T  + CD+P D
Sbjct: 248 IERAKSIRARRTECVTNSVTCDRPSD 273


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -3

Query: 636 VHALRVSQLLHQSQGWSQIIGLVHQEP 556
           V  LR+S+L+     W ++   ++Q+P
Sbjct: 217 VRLLRLSRLVRYVSQWEEVYIPLYQQP 243


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 13/63 (20%), Positives = 25/63 (39%)
 Frame = +3

Query: 552 GEALDAQDQ*SATSLATDEEVERRARHERDRQLLHQNIVSV*NSQS*RHHVLEQEQSFET 731
           G  LD  D           ++  +  H + +Q  HQ+     + Q+   H++ Q+Q    
Sbjct: 152 GSVLDGPDSPPLVESQMHHQMHTQHPHMQPQQGQHQSQAQQQHLQAHEQHMMYQQQQQSQ 211

Query: 732 VSS 740
            +S
Sbjct: 212 AAS 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,232
Number of Sequences: 438
Number of extensions: 5572
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)