Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30510
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08550.1 68417.m01406 glutaredoxin-related contains Pfam prof...    30   1.5  
At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,...    29   2.6  
At5g67150.1 68418.m08465 transferase family protein similar to a...    29   3.4  
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc...    29   4.5  
At3g62700.1 68416.m07043 glutathione-conjugate transporter, puta...    28   5.9  
At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa...    28   5.9  
At3g54290.1 68416.m06000 expressed protein contains Pfam PF03794...    28   7.8  

>At4g08550.1 68417.m01406 glutaredoxin-related contains Pfam profile
           PF04784: Protein of unknown function, DUF547, weak hit
           to PF00462: Glutaredoxin
          Length = 587

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = -1

Query: 437 PVLLRDRPSIFWKLQRRHQVHA*AKSFRFIRNDQRLRRTGLRMGYDVLNASHVVYR 270
           P +++DR   F+K++R       +++  F+  DQRL R G R   ++ +   +VYR
Sbjct: 345 PCVVKDR---FYKMRRFKNCFLGSEAVDFLSADQRLERDGPRPIVEIASRLRLVYR 397


>At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,
           putative similar to beta-galactosidase GI:7939617 from
           [Lycopersicon esculentum]
          Length = 887

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 682 VKVDDITFWSKNSPSKLFQVDGV 750
           V  DDI+FW KN P+    +D +
Sbjct: 513 VSEDDISFWKKNGPNSTVSIDSM 535


>At5g67150.1 68418.m08465 transferase family protein similar to
           anthranilate N-hydroxycinnamoyl/benzoyltransferase,
           Dianthus caryophyllus [gi:2239091]; contains Pfam
           transferase family domain PF002458
          Length = 448

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 672 QKQCFDEVTGDRVHALRVSQLLHQSQGWSQI 580
           +K+CF  V G       V+++LH   GW+ +
Sbjct: 308 EKECFGNVVGFATVTTTVAEMLHNGLGWAAL 338


>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein weak similarity to
           CARS-Cyp [Homo sapiens]  GI:1117968; contains Pfam
           profile PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 837

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 485 NRIRRPPTNRRSPVRGAYPCRTRRGS*CTRPIIC 586
           +R R  P+  RSP+RG  P R RR S    P +C
Sbjct: 717 SRRRFSPSRFRSPLRGRTPPRYRRRSRSVSPGLC 750


>At3g62700.1 68416.m07043 glutathione-conjugate transporter,
           putative similar to glutathione-conjugate transporter
           AtMRP4 GI:2959767 from [Arabidopsis thaliana]
          Length = 1539

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 407 KSMADHEAVPANTPELPQRYLAACAENRIRRPPTNRRSPVR 529
           KS  + + VP  +PE     LA   E++  +P  N R+PVR
Sbjct: 273 KSPLNLDQVPTLSPEHRAEKLATLFESKWPKPQENSRNPVR 313


>At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 772

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +2

Query: 311 FSVRSCGDADHYE*IERI*LKRGLGAGAEVSRKSMADHEAVPANTP 448
           FS  +    DH+    R    RG G GA  S  S   H + P N+P
Sbjct: 99  FSPPNADKRDHFRYDGRRNRSRGRGTGAAGSSSSQLQHNSGPFNSP 144


>At3g54290.1 68416.m06000 expressed protein contains Pfam PF03794:
           Domain of Unknown function
          Length = 350

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -2

Query: 397 FSAGTKSTLKLNPFDLFV 344
           FS+ TKST +++PFDL V
Sbjct: 5   FSSSTKSTAEISPFDLVV 22


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,381,837
Number of Sequences: 28952
Number of extensions: 419483
Number of successful extensions: 1289
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1289
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)