Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30509
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr 2|||M...    25   7.1  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    25   9.4  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    25   9.4  

>SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 214

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +3

Query: 294 AEPDRDPHSRLXGAXXXXXQG--QFVPXQQXRPERQGVRDQELAQRHSQRAQLQHA 455
           ++ D D  +RL        Q   + +  Q+   E +G+    L   H QR QL+H+
Sbjct: 107 SDQDYDQRTRLLQGTNRLEQSSQRLLESQRIANETEGIGASILRDLHGQRNQLEHS 162


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +1

Query: 382 DLSAKAFAIRNSPSAIPNAPNFNTLGGGVDYMFKQKVGASLSGRTLTSS 528
           D+ AKA A++ SP+A  +    N L G  +Y  K     S S  T+TS+
Sbjct: 131 DVEAKAAAVKRSPAAAFDEMR-NKLVGKTNY--KSIFDKSTSNSTVTSN 176


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 178 LTGNDKNVLSAIGSADFNDRHKLSAAPQGLA 270
           L GN K +++A+G   FN R  ++   +G A
Sbjct: 405 LEGNGKLLVTAVGVNSFNGRTTMAMRTEGQA 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.128    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,602,347
Number of Sequences: 5004
Number of extensions: 25288
Number of successful extensions: 44
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)