Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30509
(533 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0969 - 24936399-24936699,24936779-24936949,24937032-249378... 32 0.33
06_02_0289 + 13825103-13825510,13825651-13826112,13826189-138270... 31 0.77
05_05_0143 + 22675463-22675592,22676227-22676414,22676492-226766... 30 1.3
01_06_1389 - 36969414-36969436,36970027-36970394,36970474-369706... 29 1.8
06_01_0499 - 3581145-3582425 29 2.4
03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434 29 2.4
02_02_0272 - 8452994-8453187,8453850-8454975 29 2.4
12_01_0801 + 7351171-7351198,7351383-7352020,7352098-7352559,735... 29 3.1
03_01_0528 + 3966687-3967643 29 3.1
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 28 4.1
06_01_0896 - 6889754-6890236 28 4.1
05_07_0359 - 29539294-29540832,29542366-29542518 28 4.1
06_02_0270 - 13613853-13614153,13614233-13614403,13614486-136153... 28 5.4
06_01_0636 + 4627533-4628546 28 5.4
11_06_0367 - 22747760-22748931,22750324-22750550,22751035-22751075 27 9.5
11_06_0364 - 22727978-22729149,22730475-22730727,22731628-227319... 27 9.5
09_02_0330 + 7321031-7321231,7321313-7321434,7321461-7322135,732... 27 9.5
03_01_0178 + 1437263-1438017,1438754-1438858,1438950-1439072,143... 27 9.5
03_01_0141 + 1116833-1117082,1117658-1118574,1119417-1119579,111... 27 9.5
>12_02_0969 -
24936399-24936699,24936779-24936949,24937032-24937852,
24937946-24938407,24938486-24938890
Length = 719
Score = 31.9 bits (69), Expect = 0.33
Identities = 24/77 (31%), Positives = 30/77 (38%)
Frame = -1
Query: 308 PVRLSPCPXTLSRASPCGAALSLWRSLKSADPMALSTFLSLPVRGTFRAAPEVPSEFTVK 129
P +P LS +PCG ALS+ S AD SL T R A P +
Sbjct: 381 PTEFTPSKSKLSIEAPCGPALSVPHSPGGADMDLADIAQSLAPIKTTRKADSSPPLVKGQ 440
Query: 128 LPACLRARVGTCLPLAK 78
C + +VG P K
Sbjct: 441 KRECGKGKVGELAPEPK 457
>06_02_0289 +
13825103-13825510,13825651-13826112,13826189-13827021,
13827104-13827274,13828025-13828076
Length = 641
Score = 30.7 bits (66), Expect = 0.77
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -1
Query: 308 PVRLSPCPXTLSRASPCGAALSLWRSLKSADPMALSTFLSL-PVRGTFRAAPEVP 147
P L+P LS +PCG ALS+ S + AD SL P++ T +A P
Sbjct: 386 PTELTPPKSKLSIEAPCGPALSVPHSPRGADMDLADIAQSLAPIKTTRKADSSPP 440
>05_05_0143 +
22675463-22675592,22676227-22676414,22676492-22676649,
22676656-22676953,22677035-22677867,22677950-22678120,
22678242-22678458,22678911-22678949,22679167-22679226
Length = 697
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -1
Query: 308 PVRLSPCPXTLSRASPCGAALSLWRSLKSADPMALSTFLSL-PVRGTFRAAPEVP 147
P L+P LS +PCG ALS+ S AD + SL P++ T +A P
Sbjct: 354 PTELTPPKSKLSIEAPCGPALSVPHSPGGADMDLVDIAQSLAPIKTTRKADSSPP 408
>01_06_1389 -
36969414-36969436,36970027-36970394,36970474-36970644,
36970727-36971559,36971642-36972103,36972182-36972915,
36973004-36973133
Length = 906
Score = 29.5 bits (63), Expect = 1.8
Identities = 25/77 (32%), Positives = 30/77 (38%)
Frame = -1
Query: 308 PVRLSPCPXTLSRASPCGAALSLWRSLKSADPMALSTFLSLPVRGTFRAAPEVPSEFTVK 129
P L+P LS +PCG ALS+ S AD SL T R A P K
Sbjct: 538 PTELTPPKSKLSIEAPCGPALSVPHSPGGADMDLADITQSLAPIKTTRKADSSPPLVKDK 597
Query: 128 LPACLRARVGTCLPLAK 78
+ +VG P K
Sbjct: 598 KRERGKGKVGELAPEPK 614
>06_01_0499 - 3581145-3582425
Length = 426
Score = 29.1 bits (62), Expect = 2.4
Identities = 22/73 (30%), Positives = 27/73 (36%)
Frame = -1
Query: 308 PVRLSPCPXTLSRASPCGAALSLWRSLKSADPMALSTFLSLPVRGTFRAAPEVPSEFTVK 129
PV SPCP ASPC W + + P L + V F + P V + T
Sbjct: 236 PVADSPCPVRAGAASPCILGAIYWITTAAPTPGMLRFDVRREVFDDFPSPPCVHHDGTSP 295
Query: 128 LPACLRARVGTCL 90
A L G L
Sbjct: 296 ATATLTELSGNKL 308
>03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434
Length = 418
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -1
Query: 320 GMRVPVRLSPCPXTLSRASPCGAALSLWRSLKSADPMAL 204
G P R+SP L+ P AALS RSL S P ++
Sbjct: 138 GEEPPRRVSPAAVVLAVLLPAEAALSFIRSLSSLAPFSI 176
>02_02_0272 - 8452994-8453187,8453850-8454975
Length = 439
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -1
Query: 305 VRLSPCPXTLSRASPCGAALSLWRSLKSADPMALSTFLSLPVRG 174
+RL P P +L RA+ A + WR L +ADP L F + RG
Sbjct: 20 LRLPPRPSSLPRAA---AVCARWRRLVTADPAFLRRFRAHHRRG 60
>12_01_0801 +
7351171-7351198,7351383-7352020,7352098-7352559,
7352641-7353105
Length = 530
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -1
Query: 308 PVRLSPCPXTLSRASPCGAALSLWRSLKSADPMALSTFLSL-PVRGTFRAAPEVP 147
P L P LS +PCG ALS+ S AD SL P++ T +A P
Sbjct: 472 PTELIPPKSKLSIEAPCGPALSVPHSPGGADMDLADIAQSLAPIKTTRKAVSSPP 526
>03_01_0528 + 3966687-3967643
Length = 318
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -1
Query: 326 KPGMRVPVRLSPCPXTLSRASPCGAALSLWRSLKSADPMA 207
KP R P R +P P L +SPC + S PM+
Sbjct: 150 KPPPRTPTRANPPPPPLPTSSPCSTVTNSVGSAALPPPMS 189
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 308 PVRLSPCPXTLSRASPCGAA 249
P+RLSP P ++SR P AA
Sbjct: 153 PIRLSPSPRSMSRTRPSSAA 172
>06_01_0896 - 6889754-6890236
Length = 160
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = -1
Query: 308 PVRLSPCPXTLSRASPCGAALSLWRSLKSADPMALSTFLSLPVRGTFRAAPEVP 147
P+ +P TLS A GA + L A + P RG RAAP +P
Sbjct: 35 PLPSTPSSSTLSAAGSSGATAAAVIDLICAGELGSRRRRCCPRRGRLRAAPPLP 88
>05_07_0359 - 29539294-29540832,29542366-29542518
Length = 563
Score = 28.3 bits (60), Expect = 4.1
Identities = 23/85 (27%), Positives = 32/85 (37%)
Frame = -1
Query: 341 PXCSXKPGMRVPVRLSPCPXTLSRASPCGAALSLWRSLKSADPMALSTFLSLPVRGTFRA 162
P KPG P R +P P S +S AA +L +K + P+R +
Sbjct: 155 PVLEAKPGRGRP-RKNPLPVASSTSSAAAAATALSLRVKRGPGRPRKNAAATPLRLGVKR 213
Query: 161 APEVPSEFTVKLPACLRARVGTCLP 87
P P + P L A+ G P
Sbjct: 214 GPGRPRKNAAATPLRLGAKRGPGRP 238
>06_02_0270 -
13613853-13614153,13614233-13614403,13614486-13615318,
13615401-13615746,13615940-13616127,13616238-13616408
Length = 669
Score = 27.9 bits (59), Expect = 5.4
Identities = 24/77 (31%), Positives = 31/77 (40%)
Frame = -1
Query: 308 PVRLSPCPXTLSRASPCGAALSLWRSLKSADPMALSTFLSLPVRGTFRAAPEVPSEFTVK 129
P+ L+P LS +P G ALS+ S AD SL T R A P +
Sbjct: 331 PMELTPPKSKLSIEAPRGPALSVPHSPGGADMDLADIAQSLAPIKTTRKANSSPPLVKGQ 390
Query: 128 LPACLRARVGTCLPLAK 78
C + +VG P K
Sbjct: 391 KRECGKGKVGELAPEPK 407
>06_01_0636 + 4627533-4628546
Length = 337
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = -1
Query: 359 LTLPATPXCSXKPGMRVPVRLSPCPXTLSRASPCGAALSLWRSLKSADPMAL 204
LTLP P + VP+ L P T + A P G A+ S +A P L
Sbjct: 12 LTLPM-PQRDAPTSLAVPLPLPPAATTTTSAPPAGGAMHPLASAGAAPPPPL 62
>11_06_0367 - 22747760-22748931,22750324-22750550,22751035-22751075
Length = 479
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 198 VLVVAGERDLQGGPGGSV*VHCEAAGLSPRTC 103
V +VAGE Q GP S V C+ AG + C
Sbjct: 388 VSIVAGETPPQHGPLLSFFVECDQAGRGEKPC 419
>11_06_0364 - 22727978-22729149,22730475-22730727,22731628-22731963,
22732306-22732512,22734988-22735686,22736441-22736590,
22740204-22740962,22741023-22741235
Length = 1262
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 198 VLVVAGERDLQGGPGGSV*VHCEAAGLSPRTC 103
V +VAGE Q GP S V C+ AG + C
Sbjct: 1171 VSIVAGETPPQHGPLLSFFVECDQAGRGEKPC 1202
>09_02_0330 +
7321031-7321231,7321313-7321434,7321461-7322135,
7322218-7322287,7322469-7322768
Length = 455
Score = 27.1 bits (57), Expect = 9.5
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 308 PVRLSPCPXTLSRASPCGAALSLWRSLKSADPMALSTFLSL-PVRGTFRAAPEVP 147
P L+P LS +P G ALS+ SL AD SL P++ T +A P
Sbjct: 154 PTELTPPKSKLSIEAPRGPALSVPHSLGGADMDLADIAQSLAPIKTTRKADSSPP 208
>03_01_0178 +
1437263-1438017,1438754-1438858,1438950-1439072,
1439908-1440078,1440163-1440292,1440372-1440581,
1440675-1440773
Length = 530
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +1
Query: 103 TRARRQAGSFTVNSDGTS--GAALKVPLTGNDKNVLSAIGSADFNDRHKLSAAPQGLALD 276
TR+ +G S G+ GA + +G+ +S +G + +L A GLA +
Sbjct: 162 TRSTAASGMSATTSGGSERDGATPRSTASGSAGPEVSHLGWGHWFTLRELEEATDGLAEE 221
Query: 277 NVXGHG 294
NV G G
Sbjct: 222 NVIGEG 227
>03_01_0141 +
1116833-1117082,1117658-1118574,1119417-1119579,
1119668-1120497,1120562-1120570
Length = 722
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 348 CDAEXLPEAGNAGPGQAQPV 289
C A LPE GN G GQ+ V
Sbjct: 486 CSATLLPEEGNTGDGQSPKV 505
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.128 0.355
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,182,631
Number of Sequences: 37544
Number of extensions: 226705
Number of successful extensions: 598
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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