Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30509
         (533 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6115| Best HMM Match : efhand (HMM E-Value=0.22)                    29   1.8  
SB_51871| Best HMM Match : Gag_p12 (HMM E-Value=5.8)                   27   9.6  

>SB_6115| Best HMM Match : efhand (HMM E-Value=0.22)
          Length = 822

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +1

Query: 94  HVPTRARRQAGSFTVNS---DGTSGAALKVPLTGNDKNVLSAIGSADFNDRHK 243
           HVP +     G +  NS     T G+ + +PL  ++K V+  +G    ND HK
Sbjct: 526 HVP-KVGSHGGVYFWNSFRNKDTDGSLIVLPLKDHEKRVIGLLGVDTLNDSHK 577


>SB_51871| Best HMM Match : Gag_p12 (HMM E-Value=5.8)
          Length = 458

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = -1

Query: 293 PCPXTLSRASPCGAALSLWRSLKSADPMALSTFLSLPVRGTFRAAPEVPSEFTVKLPA 120
           PC   L    PC +    ++  +       S+ ++     T R AP +PS  + ++PA
Sbjct: 251 PCTSRLRSGRPCSSRAVTFKDPRGVGVAKASSTVTNGAEKTPRDAPSIPSTPSKEIPA 308


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.312    0.128    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,200,281
Number of Sequences: 59808
Number of extensions: 224108
Number of successful extensions: 487
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)