Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30509
         (533 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK027798-1|BAB55376.1|  491|Homo sapiens protein ( Homo sapiens ...    31   3.4  
AK128030-1|BAC87237.1| 2427|Homo sapiens protein ( Homo sapiens ...    29   7.8  
AF143946-1|AAD39760.1| 2971|Homo sapiens transcriptional activat...    29   7.8  

>AK027798-1|BAB55376.1|  491|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14892 fis, clone PLACE1004270, weakly similar to
           TRANSMEMBRANE PROTEASE, SERINE 2 (EC 3.4.21.-). ).
          Length = 491

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
 Frame = -1

Query: 344 TPXCSXKPGMRVPVRLSPCPXTLSRASPCGAALSLWRSLKSADPMALSTFLS----LPVR 177
           TP     PG   P + SP   + +RASP  A+LS   S +S+   + S   S      VR
Sbjct: 64  TPPGRASPGRASPAQASPAQASPARASPALASLSRSSSGRSSSARSASVTTSPTRVYLVR 123

Query: 176 GTFRAAPEVPSEFTVKLPA--CLRARVGTCLP 87
            T   A  + S      PA    R   GT LP
Sbjct: 124 ATPVGAVPIRSSPARSAPATRATRESPGTSLP 155


>AK128030-1|BAC87237.1| 2427|Homo sapiens protein ( Homo sapiens cDNA
            FLJ46149 fis, clone TESTI4000621, moderately  similar to
            Homo sapiens Snf2-related CBP activator protein (SRCAP).
            ).
          Length = 2427

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = -1

Query: 350  PATPXCSXKPGMRVPVRLSPCP 285
            P TP  S KP    PVRLSP P
Sbjct: 1099 PPTPTLSLKPTPPAPVRLSPAP 1120


>AF143946-1|AAD39760.1| 2971|Homo sapiens transcriptional activator
           SRCAP protein.
          Length = 2971

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = -1

Query: 350 PATPXCSXKPGMRVPVRLSPCP 285
           P TP  S KP    PVRLSP P
Sbjct: 902 PPTPTLSLKPTPPAPVRLSPAP 923


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.312    0.128    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,057,995
Number of Sequences: 237096
Number of extensions: 1085551
Number of successful extensions: 3430
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3428
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5216942984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)