Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30509
         (533 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr...    29   1.6  
L23651-1|AAA27964.3|  610|Caenorhabditis elegans Temporarily ass...    28   3.7  

>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical protein
            F45E4.4 protein.
          Length = 2361

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -1

Query: 368  WNKLTLPATPXCSXKPGMRVPVRLSPCPXTLSRAS 264
            W K T   TP  S KP +  P R  P P   S+ S
Sbjct: 1980 WAKTTTSQTPSTSTKPTVTAPKRSDPIPIAPSQRS 2014


>L23651-1|AAA27964.3|  610|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 250, isoform a protein.
          Length = 610

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = -1

Query: 368 WNKLTLPATPXCSXKPGMRVPVRLSPCPXTLSR-ASPCGAALSLWRSLKSADPMALSTFL 192
           W +L  PA P C          RLS C   +      CG AL +   + S +  +L TF+
Sbjct: 548 WKQLNAPAVPTCE--------ARLSCCGRDIGDWLIACGLALPINAPIPSPNSQSLLTFV 599

Query: 191 SLPV 180
             P+
Sbjct: 600 PTPI 603


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.312    0.128    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,373,588
Number of Sequences: 27780
Number of extensions: 156007
Number of successful extensions: 337
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)