Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30508
         (680 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6YXP5 Cluster: Putative membrane protein ycf1; n=3; Em...    34   2.8  
UniRef50_UPI00006CC8C8 Cluster: conserved hypothetical protein; ...    34   3.7  
UniRef50_Q01AF8 Cluster: Guanine nucleotide exchange family prot...    34   3.7  
UniRef50_Q61Z91 Cluster: Putative uncharacterized protein CBG032...    34   3.7  
UniRef50_Q0IHV7 Cluster: LOC779553 protein; n=1; Xenopus tropica...    33   6.4  

>UniRef50_Q6YXP5 Cluster: Putative membrane protein ycf1; n=3;
            Embryophyta|Rep: Putative membrane protein ycf1 -
            Physcomitrella patens (Moss)
          Length = 1603

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
 Frame = -1

Query: 665  INLLSTFIDTDKCLNFLNVILNYNKEVNIK*SQRQD-NSVVSIQQMFXHTFRLYEL 501
            +NLL+   +T++ LNF  VIL  NK   I+ ++ Q+ N  ++I+     TFRL +L
Sbjct: 1523 LNLLNLKQNTNQILNFNKVILKENKRKRIELNKIQNKNQNLTIKHFLWPTFRLEDL 1578


>UniRef50_UPI00006CC8C8 Cluster: conserved hypothetical protein;
           n=1; Tetrahymena thermophila SB210|Rep: conserved
           hypothetical protein - Tetrahymena thermophila SB210
          Length = 784

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +1

Query: 25  KLKSNVFLYEPLIFETSDKFYPSSKLQHDQIKIEIFKLL 141
           +L + +FL  P+ FET+   +P + LQ+ +I +EI  LL
Sbjct: 83  ELANKIFLVYPIFFETTLFIHPRNVLQYSEILLEIVSLL 121


>UniRef50_Q01AF8 Cluster: Guanine nucleotide exchange family
           protein; n=2; Ostreococcus|Rep: Guanine nucleotide
           exchange family protein - Ostreococcus tauri
          Length = 1743

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 398 SKCTFECHSRTTIRYIKNCF-VYLNGALTINHTLLKVHTTEMYV*TF 535
           S  TFE H R  +R ++ C+ +YL+    +N    K   T+M    F
Sbjct: 191 SSSTFEVHDRALLRTVRTCYNIYLSSKSEVNQNTAKATLTQMLTTVF 237


>UniRef50_Q61Z91 Cluster: Putative uncharacterized protein CBG03217;
           n=1; Caenorhabditis briggsae|Rep: Putative
           uncharacterized protein CBG03217 - Caenorhabditis
           briggsae
          Length = 422

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 22  HKLKSNVFLYEPLIFETSDKFYPSSKLQHDQIKIEIFKL 138
           H ++ ++    P++   + K+ PSS +QH QI I+ F L
Sbjct: 78  HLIRDHLSRSPPMLMTVTQKYSPSSSVQHQQISIQTFAL 116


>UniRef50_Q0IHV7 Cluster: LOC779553 protein; n=1; Xenopus
           tropicalis|Rep: LOC779553 protein - Xenopus tropicalis
           (Western clawed frog) (Silurana tropicalis)
          Length = 740

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 404 CTFECHSRTTIRYIKNCFVYLNGALTINHTLLKVHTTE 517
           CT  CH R T R   +C V+  GAL  N+  + V  TE
Sbjct: 218 CTCACHRRRTTRPCNSCAVHHTGALIHNYAPVFVAVTE 255


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 526,419,644
Number of Sequences: 1657284
Number of extensions: 9111581
Number of successful extensions: 18014
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18009
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52892566912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)