Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30508
         (680 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13230.1 68414.m01535 leucine-rich repeat family protein cont...    29   3.8  
At2g17110.1 68415.m01974 expressed protein                             28   5.0  

>At1g13230.1 68414.m01535 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to gb|U42445
           Cf-2.2 from Lycopersicon pimpinellifolium
          Length = 424

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 112 QIKIEIFKLLYLHNCDFFNCRIILLITTSDD 204
           QI+ E+F+L +L +  FFNC I  ++   ++
Sbjct: 105 QIRPELFELKHLRSLSFFNCFISPMVIAKEE 135


>At2g17110.1 68415.m01974 expressed protein
          Length = 733

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 660 FVEHFHRYRQMFKFFKCNPKLQQGSEH 580
           F+ H HRY       K  PK+  GS H
Sbjct: 55  FINHHHRYNDSDSPKKAKPKMDSGSGH 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,506,979
Number of Sequences: 28952
Number of extensions: 196876
Number of successful extensions: 325
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)