Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30480
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44510.1 68415.m05534 p21Cip1-binding protein-related similar...    28   5.1  

>At2g44510.1 68415.m05534 p21Cip1-binding protein-related similar to
           p21Cip1-binding protein TOK-1beta (GI:7339688) [Homo
           sapiens]; similar to BRCA2 and Cip1/p21 interacting
           protein (GI:25989375) [Homo sapiens]
          Length = 326

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = -2

Query: 594 LKHSPVKFSKFLRLYSF--NARRNV 526
           LKH P+ FS F+RL SF   ARR++
Sbjct: 12  LKHQPLTFSPFMRLLSFASMARRDL 36


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,037,364
Number of Sequences: 28952
Number of extensions: 105839
Number of successful extensions: 216
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)