Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30479
         (373 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S...    27   1.2  
SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|ch...    26   2.2  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    25   5.0  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    24   8.8  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    24   8.8  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    24   8.8  

>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
           Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 498

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 21/53 (39%), Positives = 26/53 (49%)
 Frame = -1

Query: 223 TAAFTNINLHPSYHAFNKTSFPHSAVLHVSLSSELPFYNTNILQHRESYTKSY 65
           TAA T   LHP Y  F  T    S + +  L S LPF+ T I  +  S T +Y
Sbjct: 90  TAASTVTGLHPIYMDFQAT----SPLDYRVLDSMLPFF-TGIYGNPHSRTHAY 137


>SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 150

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 43  LFCLRMIYNFLYNFLYVVRC*CYK-KVTLRTDLRAGRPN 156
           +F + M+Y  LY  LYV  C CYK +     +    RPN
Sbjct: 73  IFIIEMLYYELYLTLYV--CWCYKLRSDFWNEAAKNRPN 109


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -1

Query: 271 HLSFCHSHVIPF 236
           H+S CH+H++P+
Sbjct: 133 HISACHTHLLPY 144


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -1

Query: 184 HAFNKTSFPHSAVLHVSLSSELPFYNTNILQHRESYTKSYKSF 56
           H ++KTSFP S  L    +  L +YN   L     +    K F
Sbjct: 120 HPYSKTSFPVSYDLDELDTMWLTYYNEFQLSSNSEWENVSKEF 162


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 261 SVTHTSSPSILDTPLRSQTSTCIHHIMRSIKHHSHIRPS 145
           S  H ++PS L+ PL++Q      ++    K  S + P+
Sbjct: 299 SPQHQANPSTLNNPLKTQNFDSSKNLYTDNKDSSLVSPT 337


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 260 LSLTRHPLPFLIHRCVHKHQL 198
           L+ T  PLP L  +CVH  +L
Sbjct: 526 LASTPSPLPILFDQCVHTVKL 546


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,260,414
Number of Sequences: 5004
Number of extensions: 23271
Number of successful extensions: 56
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)