Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30479
         (373 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0439 - 3299442-3299805,3299847-3300010                           30   0.67 
01_06_0847 + 32411521-32411619,32411737-32411851,32412292-324123...    28   2.0  
09_04_0037 + 13992103-13992624,13993001-13993180,13993423-139936...    28   2.7  
01_07_0370 - 43119049-43120278,43121376-43121420,43121421-431216...    28   2.7  
10_08_0228 - 16008333-16008752                                         26   8.2  
09_02_0389 - 8456957-8459917,8461941-8462267                           26   8.2  

>01_01_0439 - 3299442-3299805,3299847-3300010
          Length = 175

 Score = 29.9 bits (64), Expect = 0.67
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = -2

Query: 306 PSCSCFVRRRSSI---CHSVTHTSSPSILDTPLRSQTSTCIHHIMRSIKHHSHIRPSCT* 136
           P  +C+VR R+S+   C++ T+ ++ SI   PLR +      H   ++ + + +      
Sbjct: 110 PRKACYVRLRTSLDFECNNPTNINNSSIQGAPLRDEGKRWADHDYYNVMYAAGLLAFRPA 169

Query: 135 VCPQSY 118
           +CP  +
Sbjct: 170 ICPPKH 175


>01_06_0847 +
           32411521-32411619,32411737-32411851,32412292-32412375,
           32412430-32413478,32414690-32416371,32416477-32416586,
           32417634-32418430,32418839-32418951,32419147-32419194,
           32419425-32419652,32419732-32419829,32419967-32420019
          Length = 1491

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = -1

Query: 211 TNINLHPSYHAFNKTSFPHSAVLHVSLSSELPFYNTNILQHRESY 77
           T +  HP  H F +   PH++  +  L S +  +++++ +   SY
Sbjct: 448 TELKRHPEIHNFEQNLLPHNSAPYFGLPSGIVPFSSSVPRDYTSY 492


>09_04_0037 +
           13992103-13992624,13993001-13993180,13993423-13993691,
           13994120-13995773
          Length = 874

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 285 RRRSSICHSVTHTSSPSILDTPLRSQTSTCIHHIMRSIK 169
           RRR SI   + H  S   LD P     ST  H ++  +K
Sbjct: 254 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAHSVVEKVK 292


>01_07_0370 -
           43119049-43120278,43121376-43121420,43121421-43121662,
           43121908-43122686,43123123-43123463,43123565-43123785,
           43123866-43124176,43124257-43124516,43124836-43124918,
           43124940-43125036,43125132-43125305,43126215-43126592
          Length = 1386

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -2

Query: 288 VRRRSSICHSVTHTSSPSILDTPLRSQTSTCIHHIMRSIKHHSHIRPS 145
           + R SS  HS   +SSP++  +P   +T   +        H+SH  P+
Sbjct: 636 IERDSSASHSFQESSSPNMSKSPSLQKTHGFLAFRNSDANHNSHESPN 683


>10_08_0228 - 16008333-16008752
          Length = 139

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 270 ICHSVTHTSSPSILDTPL-RSQTSTCIHHI 184
           IC  VT+T+ P +  TP+ R   +TC + +
Sbjct: 43  ICDKVTYTTHPGLAHTPVPRRPMTTCTNAV 72


>09_02_0389 - 8456957-8459917,8461941-8462267
          Length = 1095

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 207 TSTCIHHIMRSIKHHSHIR 151
           T TCI +I +S++H  H+R
Sbjct: 560 TGTCIRYIPKSLEHLHHLR 578


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,748,137
Number of Sequences: 37544
Number of extensions: 143159
Number of successful extensions: 363
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)