Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30479
         (373 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.8  
SB_51542| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.7  
SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.7  
SB_54140| Best HMM Match : TFA (HMM E-Value=4.6)                       27   4.9  
SB_18611| Best HMM Match : IBN_N (HMM E-Value=7.4e-06)                 27   4.9  
SB_40227| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  

>SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1584

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
 Frame = -2

Query: 264  HSVTHTSSPSILDTPLRSQTSTC----IHHIMRSIKHHSHIRP 148
            H+V H+ +PS +  PL           IHH+   + HH H  P
Sbjct: 1476 HTVDHSWAPSPVSAPLPMAAPPSPPQRIHHVHTIVHHHVHPPP 1518


>SB_51542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 174

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 22/85 (25%), Positives = 38/85 (44%)
 Frame = -2

Query: 276 SSICHSVTHTSSPSILDTPLRSQTSTCIHHIMRSIKHHSHIRPSCT*VCPQSYLFITLTS 97
           ++I  ++T T++ +I+ T + + TS   HH      HH   + S     P + +  T+T 
Sbjct: 47  NTITTTITITTTITIIITTVNTITSQHNHHYRHHNHHHQSTQSSSP---PVNTITTTITI 103

Query: 96  YNIEKVIQKVINHS*TKQLTTITLT 22
                +I   IN   T    T T+T
Sbjct: 104 TTTITIIITTINTITTTITITTTIT 128


>SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 269 SVILSLTRHPLPFLIHRCVHKHQLASIISCV 177
           +VI+S T+ P P L   C H H ++ II  V
Sbjct: 18  TVIMSKTKQPTPVLHLFCHHYHHISVIIIAV 48


>SB_54140| Best HMM Match : TFA (HMM E-Value=4.6)
          Length = 337

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 255 THTSSPSILDTPLRSQTSTCIHHIMRSIKHHSHIRP 148
           T  ++P +L    RS TS    H++  +  H+H+RP
Sbjct: 227 TEQAAPQMLHGQRRSATS--FRHLLIGVHQHNHMRP 260


>SB_18611| Best HMM Match : IBN_N (HMM E-Value=7.4e-06)
          Length = 421

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
 Frame = -2

Query: 297 SCFVRRRSSICHSVTHTSSPSILDTPLRSQ--TSTCIHHIMRS-----IK-HHSHIRPS 145
           SC  +  SS  H++  +    ++ TP  S   T +C H +M S     IK HH  + PS
Sbjct: 262 SCHHQVMSSSSHAIIKSHHHQVMVTPSSSHAITKSCHHQVMPSSSHTIIKSHHHQVTPS 320


>SB_40227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 620

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 291 FVRRRSSICHSVTHTSSPSIL 229
           FVR R  I  SV+HT SP ++
Sbjct: 307 FVRERLGINESVSHTQSPQVV 327


>SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1185

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/56 (23%), Positives = 22/56 (39%)
 Frame = -1

Query: 223 TAAFTNINLHPSYHAFNKTSFPHSAVLHVSLSSELPFYNTNILQHRESYTKSYKSF 56
           T  +TNI   P Y   N     +  +L  ++  ++P     +  H+   TK    F
Sbjct: 177 TDKYTNIFFAPGYILSNPADEKYVEMLDEAIKDQIPILEEGLALHQRQATKDLMPF 232


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,500,733
Number of Sequences: 59808
Number of extensions: 188293
Number of successful extensions: 438
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 607387585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)