Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30479
         (373 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23448-8|AAL27226.1|  849|Caenorhabditis elegans Dnaj domain (pr...    29   1.1  
U23448-7|AAM81128.1|  868|Caenorhabditis elegans Dnaj domain (pr...    29   1.1  
U23448-6|AAL27225.1|  915|Caenorhabditis elegans Dnaj domain (pr...    29   1.1  
U23448-5|AAL27227.1|  912|Caenorhabditis elegans Dnaj domain (pr...    29   1.1  
AF077540-5|AAC26308.1|  417|Caenorhabditis elegans C-type lectin...    28   1.9  
Z74476-2|CAA98962.1|  200|Caenorhabditis elegans Hypothetical pr...    27   3.2  
AF036706-17|AAK39277.2|  582|Caenorhabditis elegans Enhanced rna...    26   7.5  

>U23448-8|AAL27226.1|  849|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 5, isoform b
           protein.
          Length = 849

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -2

Query: 249 TSSPSILDTPLR--SQTSTCIHHIMRSIKHHSH 157
           +SSP++  TP R     S+ +HH   ++ HH+H
Sbjct: 123 SSSPALPSTPSRVPHHPSSQVHHFHHNLHHHTH 155


>U23448-7|AAM81128.1|  868|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 5, isoform d
           protein.
          Length = 868

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -2

Query: 249 TSSPSILDTPLR--SQTSTCIHHIMRSIKHHSH 157
           +SSP++  TP R     S+ +HH   ++ HH+H
Sbjct: 123 SSSPALPSTPSRVPHHPSSQVHHFHHNLHHHTH 155


>U23448-6|AAL27225.1|  915|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 5, isoform a
           protein.
          Length = 915

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -2

Query: 249 TSSPSILDTPLR--SQTSTCIHHIMRSIKHHSH 157
           +SSP++  TP R     S+ +HH   ++ HH+H
Sbjct: 123 SSSPALPSTPSRVPHHPSSQVHHFHHNLHHHTH 155


>U23448-5|AAL27227.1|  912|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 5, isoform c
           protein.
          Length = 912

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -2

Query: 249 TSSPSILDTPLR--SQTSTCIHHIMRSIKHHSH 157
           +SSP++  TP R     S+ +HH   ++ HH+H
Sbjct: 123 SSSPALPSTPSRVPHHPSSQVHHFHHNLHHHTH 155


>AF077540-5|AAC26308.1|  417|Caenorhabditis elegans C-type lectin
           protein 20 protein.
          Length = 417

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 262 FCHSHVIPF-HS*YTAAFTNINLHPSYHAFN 173
           FC+ H+     S     FT +++HP+YH  N
Sbjct: 324 FCYYHIYTVGSSSIMLTFTQLDMHPNYHELN 354


>Z74476-2|CAA98962.1|  200|Caenorhabditis elegans Hypothetical
           protein W05B10.2 protein.
          Length = 200

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -1

Query: 190 SYHAFNKTSFPHSAVLHVSLSSELPFYNTNILQHRESYTKSYKS 59
           S+   N++S    AV  VS+SSE  FY T   + +  ++K +KS
Sbjct: 156 SHPVHNRSS---DAVNEVSISSEAKFYTTETPEAQVFHSKKFKS 196


>AF036706-17|AAK39277.2|  582|Caenorhabditis elegans Enhanced rnai
           (rna interference)protein 1, isoform b protein.
          Length = 582

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -1

Query: 208 NINLHPSYHAF--NKTSFPHSAVLHVSLSSEL 119
           N++  PS H F  + TS PH+   HV+ SS L
Sbjct: 524 NLSNAPSLHEFPSSSTSSPHATSEHVTSSSPL 555


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,028,605
Number of Sequences: 27780
Number of extensions: 135809
Number of successful extensions: 350
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)