Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30479
         (373 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10700.1 68414.m01217 ribose-phosphate pyrophosphokinase 3 / ...    30   0.56 
At5g35380.1 68418.m04205 protein kinase family protein contains ...    29   1.3  
At5g15630.1 68418.m01829 phytochelatin synthetase family protein...    29   1.3  
At4g05390.1 68417.m00821 ferredoxin--NADP(+) reductase, putative...    27   3.0  
At3g11960.2 68416.m01476 cleavage and polyadenylation specificit...    27   5.3  
At3g11960.1 68416.m01475 cleavage and polyadenylation specificit...    27   5.3  
At2g13610.1 68415.m01500 ABC transporter family protein                27   5.3  
At1g16220.1 68414.m01942 protein phosphatase 2C family protein /...    26   9.2  

>At1g10700.1 68414.m01217 ribose-phosphate pyrophosphokinase 3 /
           phosphoribosyl diphosphate synthetase 3 (PRS3) nearly
           identical to phosphoribosyl diphosphate synthase
           GI:4902470 from [Arabidopsis thaliana]
          Length = 411

 Score = 29.9 bits (64), Expect = 0.56
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = -2

Query: 276 SSICHSVTHTSSPSILDTPLRSQTSTCIHHIMRSIKHHS 160
           SS   S++ +SSPS L+    S ++ CI   +RS+++HS
Sbjct: 21  SSTSSSLSSSSSPSFLNFKTASVSNRCIKCGVRSLENHS 59


>At5g35380.1 68418.m04205 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 731

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 219 LRSQTSTCIHHIMRSIKHHSHIRPS 145
           LRS TS+  H  M S++HHSH + S
Sbjct: 153 LRSATSSPPHSNMPSMRHHSHAQTS 177


>At5g15630.1 68418.m01829 phytochelatin synthetase family protein /
           COBRA cell expansion protein COBL4 similar to
           phytochelatin synthetase [Hordeum vulgare subsp.
           vulgare] GI:29570314; identified in Roudier, et al,
           Plant Phys. (2002) 130:538-548 (PMID:12376623); contains
           Pfam profile PF04833: Phytochelatin synthetase-like
           conserved region
          Length = 431

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -2

Query: 306 PSCSCFVRRRSSICHSVTHTSSPSILDTPLRSQTS--TCIHHIMRSIKHHSHIR 151
           PSC+C    + S   + +   +   L+TP +  T    C HH M  ++ H H++
Sbjct: 233 PSCACGCENKKSCVKADSKILTKKGLNTPKKDNTPLLQCTHH-MCPVRVHWHVK 285


>At4g05390.1 68417.m00821 ferredoxin--NADP(+) reductase, putative /
           adrenodoxin reductase, putative strong similarity to
           SP|P41345 Ferredoxin--NADP reductase, root isozyme,
           chloroplast precursor (EC 1.18.1.2) (FNR) {Oryza
           sativa}, ferredoxin-NADP reductase precursor [Zea mays]
           GI:500751
          Length = 378

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 303 SCSCFVRRRSSICHSVTHTSSPSILDTPL 217
           S S  V++RS+IC S+  +S   +L TPL
Sbjct: 49  SRSLGVKKRSTICMSLQQSSKSKVLVTPL 77


>At3g11960.2 68416.m01476 cleavage and polyadenylation specificity
           factor (CPSF) A subunit C-terminal domain-containing
           protein similar to Splicing factor 3B subunit 3
           (Spliceosome associatedprotein 130) (SAP 130) (SF3b130)
           (Pre-mRNA splicing factor SF3b 130kDa subunit)
           (SP:Q15393) [Homo sapiens]; contains Pfam PF03178 : CPSF
           A subunit region
          Length = 1329

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -2

Query: 237 SILDTPLRSQTST-CIHHIMRSIKHHSHIRPSCT*VCPQSYLFITLTSYNIEKVI 76
           ++ D P   QT+   + +   S +  +H  P C+  CPQ  LF++    ++ +++
Sbjct: 784 ALSDRPWLLQTARQSLSYTSISFQPSTHATPVCSFECPQGILFVSENCLHLVEMV 838


>At3g11960.1 68416.m01475 cleavage and polyadenylation specificity
            factor (CPSF) A subunit C-terminal domain-containing
            protein similar to Splicing factor 3B subunit 3
            (Spliceosome associatedprotein 130) (SAP 130) (SF3b130)
            (Pre-mRNA splicing factor SF3b 130kDa subunit)
            (SP:Q15393) [Homo sapiens]; contains Pfam PF03178 : CPSF
            A subunit region
          Length = 1379

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -2

Query: 237  SILDTPLRSQTST-CIHHIMRSIKHHSHIRPSCT*VCPQSYLFITLTSYNIEKVI 76
            ++ D P   QT+   + +   S +  +H  P C+  CPQ  LF++    ++ +++
Sbjct: 842  ALSDRPWLLQTARQSLSYTSISFQPSTHATPVCSFECPQGILFVSENCLHLVEMV 896


>At2g13610.1 68415.m01500 ABC transporter family protein
          Length = 649

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = -2

Query: 285 RRRSSICHSVTHTSSPSILDTPLRSQTSTCIHHIMRSIKHHSHIR 151
           RRR SI   V H     ILD P     ST    I+  +KH +  R
Sbjct: 188 RRRVSIGVEVIHDPKVLILDEPTSGLDSTSALLIIDMLKHMAETR 232


>At1g16220.1 68414.m01942 protein phosphatase 2C family protein /
           PP2C family protein similar to protein phosphatase-2C;
           PP2C (GI:3643088) [Mesembryanthemum crystallinum];
           contains Pfam PF00481 : Protein phosphatase 2C domain;
          Length = 491

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 21/76 (27%), Positives = 35/76 (46%)
 Frame = -2

Query: 246 SSPSILDTPLRSQTSTCIHHIMRSIKHHSHIRPSCT*VCPQSYLFITLTSYNIEKVIQKV 67
           S+PS  DT  R+   T +      +K+ +     C  VC    LF+  TS      + + 
Sbjct: 338 SAPS-RDTAARAVVDTAVR--AWRLKYPTSKNDDCAVVC----LFLEDTSAGGTVEVSET 390

Query: 66  INHS*TKQLTTITLTS 19
           +NHS  +   ++T+TS
Sbjct: 391 VNHSHEESTESVTITS 406


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,407,685
Number of Sequences: 28952
Number of extensions: 119182
Number of successful extensions: 348
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 497853200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)