Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30478
         (369 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...    59   2e-10
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...    59   2e-10
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    29   0.17 
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    27   0.70 
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    27   0.70 
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   2.8  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    24   6.5  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    24   6.5  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    24   8.6  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    24   8.6  
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe...    24   8.6  
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    24   8.6  

>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score = 59.3 bits (137), Expect = 2e-10
 Identities = 28/37 (75%), Positives = 32/37 (86%)
 Frame = -2

Query: 365 VPKMTVAALHVTEKARARILAAGGEILTFDQLALRAP 255
           VPK++VAAL  T+ ARARIL AGGE+LT DQLALRAP
Sbjct: 97  VPKLSVAALRFTKSARARILKAGGEVLTLDQLALRAP 133



 Score = 44.8 bits (101), Expect = 4e-06
 Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
 Frame = -1

Query: 243 TVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPSRRA 106
           TVL++G+++AREA RHFG     P  H  PYVR++G   E+AR  R++
Sbjct: 138 TVLLRGKKHAREAYRHFG---FGPHKHKAPYVRSEGRKFERARGRRKS 182


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 58.8 bits (136), Expect = 2e-10
 Identities = 27/37 (72%), Positives = 32/37 (86%)
 Frame = -2

Query: 365 VPKMTVAALHVTEKARARILAAGGEILTFDQLALRAP 255
           VPK+++AAL  T+ ARARIL AGGE+LT DQLALRAP
Sbjct: 97  VPKLSIAALRFTKSARARILKAGGEVLTLDQLALRAP 133



 Score = 46.0 bits (104), Expect = 2e-06
 Identities = 24/48 (50%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
 Frame = -1

Query: 243 TVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPSRRA 106
           TVLV+G+++AREA RHFG     P  H  PYVR++G   E+AR  R++
Sbjct: 138 TVLVRGKKHAREAYRHFG---FGPHKHKAPYVRSEGRKFERARGRRKS 182


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 29.5 bits (63), Expect = 0.17
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -2

Query: 245 RQYWYKVSEMLVRQCVTLALLQEHRALTLNPMFAPRDMKKQGPVVVLM 102
           R  +YK SE ++ Q   + +LQ+  ALT N +    +  + G +VVL+
Sbjct: 104 RYCYYKESEKILGQTYGMLVLQDFEALTPNLLARTIETVEGGGIVVLL 151


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 27.5 bits (58), Expect = 0.70
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 282 SKNFSSSSQNACTSFFGNMKSSHRH 356
           SKN  SS  N+ TSFF ++ + +RH
Sbjct: 2   SKNSFSSMANSVTSFFQSLTTPNRH 26


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 27.5 bits (58), Expect = 0.70
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +3

Query: 231 VPVLSSCQRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRN 365
           +P  SS   ++ ++ + S + SSS+ +A TS+  +  SS+    N
Sbjct: 549 IPNASSSVYASSTEALSSNSLSSSTSSASTSYIPSASSSYEVASN 593


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 231 VPVLSSCQRSTKSQLIKSKNFSSSSQ-NACTSFFGNMKSS 347
           VP+ SS   S  S    S + SSSS+ ++ +SF   M SS
Sbjct: 208 VPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSS 247


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 219 FADLVPVLSSCQRSTKSQLIKSKNFSSSSQNACTSF 326
           +  + P L SC ++T  +LIK +    ++   CT F
Sbjct: 260 YPQIKPHLLSCLKNTHQELIKLETEVYNATKNCTLF 295


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 316 HAFWLLEEKFLLLISWLFVLRWQEDST 236
           H +WL    F+L+I  LFV     D+T
Sbjct: 412 HVYWLYPIAFVLIILGLFVYHVFVDAT 438


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 219 NAREAVRHFGPAPGAPRSHTKPYVRTKGHEKARPS 115
           N  E++    P+     SHT    R+KG++   PS
Sbjct: 39  NVDESLDSSNPSSNEKASHTNEEYRSKGNQSYVPS 73


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -1

Query: 237 LVQGQRNAREAVRHFGPAPGA-PR 169
           L Q +R     V HFG APG+ PR
Sbjct: 849 LSQKRRRGEPVVHHFGFAPGSTPR 872


>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 236 WYKVSEMLVRQCVTLALLQEHRAL 165
           WY ++++L+ +C T   +   RAL
Sbjct: 161 WYPLADLLLPECQTRIQIDSSRAL 184


>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 455

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +3

Query: 192 QSDALPHEHFADLVPVLSSCQRSTKSQLIKSKNFSSSSQ 308
           Q D +P E+    +  L+S   STKS  +     +++++
Sbjct: 265 QRDQIPEENIVPRISYLTSTTTSTKSSPVPESTTTNTTE 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,309,344
Number of Sequences: 5004
Number of extensions: 22316
Number of successful extensions: 74
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)