Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30478
(369 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 70 5e-13
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 69 9e-13
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 67 4e-12
06_03_1190 - 28274801-28275163,28275662-28275853,28275965-282760... 29 1.5
02_05_0642 + 30576158-30576289,30576436-30576503,30577167-305774... 29 1.5
03_01_0545 - 4086692-4087591 27 6.1
11_06_0510 + 24420402-24422582 26 8.1
01_07_0360 + 43056226-43057566 26 8.1
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 70.1 bits (164), Expect = 5e-13
Identities = 33/48 (68%), Positives = 38/48 (79%), Gaps = 2/48 (4%)
Frame = -1
Query: 243 TVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPSRRA 106
TVL++G +NAREAVRHFG APG P SHTKPYVR+KG EKAR R +
Sbjct: 136 TVLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNS 183
Score = 59.7 bits (138), Expect = 7e-10
Identities = 29/38 (76%), Positives = 31/38 (81%)
Frame = -2
Query: 365 VPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPL 252
+PKM V AL TE ARARI+ AGGE LTFDQLALRAPL
Sbjct: 95 IPKMKVTALRFTETARARIVNAGGECLTFDQLALRAPL 132
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 69.3 bits (162), Expect = 9e-13
Identities = 32/48 (66%), Positives = 39/48 (81%), Gaps = 2/48 (4%)
Frame = -1
Query: 243 TVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPSRRA 106
TVL++G +NAREAV+HFGPAPG P S+TKPYVR+KG EKAR R +
Sbjct: 143 TVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRKFEKARGRRNS 190
Score = 60.1 bits (139), Expect = 5e-10
Identities = 30/40 (75%), Positives = 32/40 (80%)
Frame = -2
Query: 365 VPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPLAR 246
VP M VAAL TE ARARI+ AGGE LTFDQLALRAPL +
Sbjct: 102 VPAMKVAALRFTETARARIINAGGECLTFDQLALRAPLGQ 141
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 67.3 bits (157), Expect = 4e-12
Identities = 31/47 (65%), Positives = 38/47 (80%), Gaps = 2/47 (4%)
Frame = -1
Query: 240 VLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPSRRA 106
VL++G +NAREAV+HFGPAPG P S+TKPYVR+KG EKAR R +
Sbjct: 153 VLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRKFEKARGRRNS 199
Score = 61.3 bits (142), Expect = 2e-10
Identities = 42/83 (50%), Positives = 47/83 (56%)
Frame = -2
Query: 365 VPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPLARRQYWYKVSEMLVRQCVTLAL 186
VP M VAAL TE ARARI+ GGE LTFDQLALRAPL + Y + E+L AL
Sbjct: 94 VPAMKVAALRFTETARARIVNTGGECLTFDQLALRAPLGQNTY-IAMPEILTID--NFAL 150
Query: 185 LQEHRALTLNPMFAPRDMKKQGP 117
LQ L P A +K GP
Sbjct: 151 LQ---VLLRGPKNAREAVKHFGP 170
>06_03_1190 -
28274801-28275163,28275662-28275853,28275965-28276088,
28276177-28276320,28276524-28276640,28277189-28277308,
28277433-28277521,28277609-28277685,28278250-28278322,
28278578-28279012,28280247-28280442,28281270-28281490,
28281591-28281703,28282552-28283146,28283236-28283418,
28283548-28283712,28283808-28284029
Length = 1142
Score = 28.7 bits (61), Expect = 1.5
Identities = 15/64 (23%), Positives = 28/64 (43%)
Frame = -2
Query: 314 RILAAGGEILTFDQLALRAPLARRQYWYKVSEMLVRQCVTLALLQEHRALTLNPMFAPRD 135
R+L GG + A R W K+S++ R C +A ++ + + P+
Sbjct: 294 RVLRPGGYFVYSSPEAYAMDPINRNIWRKMSDLARRMCWQIASKEDQTVIWIKPLTNECY 353
Query: 134 MKKQ 123
MK++
Sbjct: 354 MKRE 357
>02_05_0642 +
30576158-30576289,30576436-30576503,30577167-30577487,
30578318-30579146
Length = 449
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 170 RGAPGAGPK*RTASRAFR*PCTSTVFLPAEHEEPAD 277
+GA G G + R + + PC+ T+ + EH + AD
Sbjct: 57 KGAGGRGGRFRAPASSISQPCSRTIIITNEHVQNAD 92
>03_01_0545 - 4086692-4087591
Length = 299
Score = 26.6 bits (56), Expect = 6.1
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = -1
Query: 231 QGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGHEKAR 121
+G R R VRH A AP T P RT AR
Sbjct: 169 RGNRRGRRRVRHAHAAATAPLMMTSPSPRTPAAAVAR 205
>11_06_0510 + 24420402-24422582
Length = 726
Score = 26.2 bits (55), Expect = 8.1
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = -1
Query: 366 SSEDDGGCSSCYRKSSCTHFGCWRRNSY 283
+ +DD GC SC S C C + Y
Sbjct: 513 ADKDDDGCCSCSSSSKCLRCLCSSSSGY 540
>01_07_0360 + 43056226-43057566
Length = 446
Score = 26.2 bits (55), Expect = 8.1
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -2
Query: 356 MTVAALHVTEKARARILAAGGEILTFDQLALRAPLARRQYW 234
+ VAA+ + R+L G +LTFD R L Y+
Sbjct: 84 LMVAAMRGNTECVVRLLRGGANVLTFDSPRARTCLHHAAYY 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,207,961
Number of Sequences: 37544
Number of extensions: 167948
Number of successful extensions: 523
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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