Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30478
         (369 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)               58   2e-09
SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.51 
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.67 
SB_39837| Best HMM Match : Ion_trans (HMM E-Value=8.5e-12)             29   1.2  
SB_22966| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.7  
SB_37830| Best HMM Match : Peptidase_C54 (HMM E-Value=3.3e-11)         27   3.6  
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.6  
SB_32577| Best HMM Match : PH (HMM E-Value=7e-17)                      27   4.8  
SB_30399| Best HMM Match : ERM (HMM E-Value=0.37)                      27   4.8  
SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97)                    27   6.3  
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)                 26   8.3  

>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score = 58.4 bits (135), Expect = 2e-09
 Identities = 28/40 (70%), Positives = 32/40 (80%)
 Frame = -2

Query: 365 VPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPLAR 246
           VP + + AL  +E ARARIL AGGEILTFDQLALRAPL +
Sbjct: 202 VPALKICALRFSETARARILKAGGEILTFDQLALRAPLGQ 241



 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 23/46 (50%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
 Frame = -1

Query: 243 TVLVQGQRNAREAVRHFGPAPGAPRSHTK-----PYVRTKGHEKAR 121
           TVL+QG R AREA RH G APG P S T       Y+ T G  + R
Sbjct: 243 TVLLQGPRKAREAERHMGLAPGVPHSDTNWCGDLDYIGTDGDAQCR 288


>SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 30.3 bits (65), Expect = 0.51
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 252 QRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRH 356
           +R+ +S L+ S+N   ++QNA T+FF + K  H +
Sbjct: 15  RRANESTLLTSENNDIANQNADTAFFTSKKKRHNN 49


>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 29.9 bits (64), Expect = 0.67
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 349 WLLFMLPKKLVHAFWLLEEKFLLLISWLFVLRW 251
           WL ++  + L H  WL   ++L  +SWL+ +RW
Sbjct: 20  WLNYV--RWLYHVRWLYHVRWLYHVSWLYHVRW 50



 Score = 26.6 bits (56), Expect = 6.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 322 LVHAFWLLEEKFLLLISWLFVLRW 251
           L H  WL +  +L  + WL  +RW
Sbjct: 3   LYHVIWLYDVSWLYHVRWLNYVRW 26



 Score = 26.2 bits (55), Expect = 8.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 322 LVHAFWLLEEKFLLLISWLFVLRW 251
           L H  WL    +L  + WL+ +RW
Sbjct: 33  LYHVRWLYHVSWLYHVRWLYHVRW 56


>SB_39837| Best HMM Match : Ion_trans (HMM E-Value=8.5e-12)
          Length = 622

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 322 LVHAFWLLEEKFLLLISWLFVLRW 251
           L H  WL +  +L  + WL+ +RW
Sbjct: 106 LYHVIWLYDVSWLYHVRWLYYVRW 129



 Score = 27.9 bits (59), Expect = 2.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 349 WLLFMLPKKLVHAFWLLEEKFLLLISWLFVLRW 251
           WL ++  + L H  WL    +L  + WL+ +RW
Sbjct: 123 WLYYV--RWLYHVRWLYHVSWLYHVRWLYHVRW 153


>SB_22966| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 237 VLSSCQRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRN 365
           V+SSC  S+ SQ  +  N SSS+ N   S   N   + +H  N
Sbjct: 227 VVSSCDTSSFSQPFQVNNNSSSNNNDNDSNINNNIKNKKHSSN 269


>SB_37830| Best HMM Match : Peptidase_C54 (HMM E-Value=3.3e-11)
          Length = 878

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 97  LDISTTTGPCFFMSLGANIGFSVRARCSWSRAKVTHCLTSI 219
           L IS +TG  + MSL   + FSV+   +W R  + H    +
Sbjct: 547 LYISDSTGLSYSMSLERVLYFSVKTGSTWLRHYIDHSFVDL 587


>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +1

Query: 178  SWSRAKVTHCLTSISLTLYQY 240
            +W RAKV HC +S S+T+ QY
Sbjct: 2539 TWYRAKVLHCDSSFSITV-QY 2558


>SB_32577| Best HMM Match : PH (HMM E-Value=7e-17)
          Length = 1248

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 213  REAVRHFGPAPGAPRSHTKPYVRTKGHEKARP 118
            ++AV+   PAP APR    P V+  G ++  P
Sbjct: 978  KDAVKPSRPAPPAPRRPPPPAVKQDGEKEVLP 1009


>SB_30399| Best HMM Match : ERM (HMM E-Value=0.37)
          Length = 562

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 252 QRSTKSQLIKS-KNFSSSSQNACTSFFGNMKSS 347
           QR T  +L  S K+F  +++++C + F N+ SS
Sbjct: 463 QRRTNRRLTSSLKDFQKATKSSCVTSFSNLSSS 495


>SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97)
          Length = 971

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 103 ISTTTGPCFFMSLGANIGFSVRARCSWSRAKVTHCLTSISLTLYQY 240
           I+++  PC  M+  + +  S R    W R ++   L  +  TL QY
Sbjct: 856 IASSRDPCGDMTYTSGLCDSERGLRDWDREEINAALDPLEATLSQY 901


>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
          Length = 507

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +3

Query: 174 VLLEQGQSDALPHEHFADLVPVL--SSCQRSTKSQL-IKSKNFSSSSQNACTSFFGNMKS 344
           V L   + DA+  + F   +P L  S   R T++ L + S N + S+ N C  + GN+  
Sbjct: 211 VALSDIRRDAIRVDGFFLRIPKLKPSDTDRLTETTLSLMSSNMNRSNSNDCRVYVGNLPQ 270

Query: 345 SHR 353
             R
Sbjct: 271 DVR 273


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,186,113
Number of Sequences: 59808
Number of extensions: 181765
Number of successful extensions: 554
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)