Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30478
(369 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18 pro... 62 4e-10
DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18 p... 62 4e-10
BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18 p... 62 4e-10
BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18 p... 62 4e-10
BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18 p... 62 4e-10
AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18 p... 62 4e-10
Y18448-1|CAA77176.1| 3851|Homo sapiens Bassoon protein protein. 28 8.2
AF346903-1|AAM43828.1| 200|Homo sapiens histamine H3 receptor i... 28 8.2
AF052224-1|AAC83555.1| 3926|Homo sapiens neuronal double zinc fi... 28 8.2
AB007894-1|BAA23707.1| 1571|Homo sapiens KIAA0434 protein. 28 8.2
>L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 62.5 bits (145), Expect = 4e-10
Identities = 31/49 (63%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
Frame = -1
Query: 243 TVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPSRRAN 103
TVL+ G R RE RHFG APG P SHTKPYVR+KG E+AR RRA+
Sbjct: 136 TVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERAR-GRRAS 183
Score = 55.2 bits (127), Expect = 6e-08
Identities = 26/37 (70%), Positives = 31/37 (83%)
Frame = -2
Query: 365 VPKMTVAALHVTEKARARILAAGGEILTFDQLALRAP 255
VPK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P
Sbjct: 95 VPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSP 131
>DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18
protein.
Length = 164
Score = 62.5 bits (145), Expect = 4e-10
Identities = 31/49 (63%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
Frame = -1
Query: 243 TVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPSRRAN 103
TVL+ G R RE RHFG APG P SHTKPYVR+KG E+AR RRA+
Sbjct: 113 TVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERAR-GRRAS 160
Score = 55.2 bits (127), Expect = 6e-08
Identities = 26/37 (70%), Positives = 31/37 (83%)
Frame = -2
Query: 365 VPKMTVAALHVTEKARARILAAGGEILTFDQLALRAP 255
VPK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P
Sbjct: 72 VPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSP 108
>BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 62.5 bits (145), Expect = 4e-10
Identities = 31/49 (63%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
Frame = -1
Query: 243 TVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPSRRAN 103
TVL+ G R RE RHFG APG P SHTKPYVR+KG E+AR RRA+
Sbjct: 136 TVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERAR-GRRAS 183
Score = 55.2 bits (127), Expect = 6e-08
Identities = 26/37 (70%), Positives = 31/37 (83%)
Frame = -2
Query: 365 VPKMTVAALHVTEKARARILAAGGEILTFDQLALRAP 255
VPK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P
Sbjct: 95 VPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSP 131
>BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 62.5 bits (145), Expect = 4e-10
Identities = 31/49 (63%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
Frame = -1
Query: 243 TVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPSRRAN 103
TVL+ G R RE RHFG APG P SHTKPYVR+KG E+AR RRA+
Sbjct: 136 TVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERAR-GRRAS 183
Score = 55.2 bits (127), Expect = 6e-08
Identities = 26/37 (70%), Positives = 31/37 (83%)
Frame = -2
Query: 365 VPKMTVAALHVTEKARARILAAGGEILTFDQLALRAP 255
VPK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P
Sbjct: 95 VPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSP 131
>BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 62.5 bits (145), Expect = 4e-10
Identities = 31/49 (63%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
Frame = -1
Query: 243 TVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPSRRAN 103
TVL+ G R RE RHFG APG P SHTKPYVR+KG E+AR RRA+
Sbjct: 136 TVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERAR-GRRAS 183
Score = 55.2 bits (127), Expect = 6e-08
Identities = 26/37 (70%), Positives = 31/37 (83%)
Frame = -2
Query: 365 VPKMTVAALHVTEKARARILAAGGEILTFDQLALRAP 255
VPK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P
Sbjct: 95 VPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSP 131
>AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 62.5 bits (145), Expect = 4e-10
Identities = 31/49 (63%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
Frame = -1
Query: 243 TVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPSRRAN 103
TVL+ G R RE RHFG APG P SHTKPYVR+KG E+AR RRA+
Sbjct: 136 TVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERAR-GRRAS 183
Score = 55.2 bits (127), Expect = 6e-08
Identities = 26/37 (70%), Positives = 31/37 (83%)
Frame = -2
Query: 365 VPKMTVAALHVTEKARARILAAGGEILTFDQLALRAP 255
VPK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P
Sbjct: 95 VPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSP 131
>Y18448-1|CAA77176.1| 3851|Homo sapiens Bassoon protein protein.
Length = 3851
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 219 NAREAVRHFGPAPGAPRSHTKPYVRTKGHEKARP 118
+ R + RH G PG R KP+ R G +ARP
Sbjct: 3575 HGRHSGRHTGEEPG--RRAAKPHARDLGRHEARP 3606
>AF346903-1|AAM43828.1| 200|Homo sapiens histamine H3 receptor
isoform 5 protein.
Length = 200
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 195 FGPAPGAPRSHTKPYVRTKGHEKARPSRR 109
+GPAP APR +R + H + PSRR
Sbjct: 167 YGPAPAAPRG----ALRGRAHSRGAPSRR 191
>AF052224-1|AAC83555.1| 3926|Homo sapiens neuronal double zinc finger
protein protein.
Length = 3926
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 219 NAREAVRHFGPAPGAPRSHTKPYVRTKGHEKARP 118
+ R + RH G PG R KP+ R G +ARP
Sbjct: 3650 HGRHSGRHTGEEPG--RRAAKPHARDLGRHEARP 3681
>AB007894-1|BAA23707.1| 1571|Homo sapiens KIAA0434 protein.
Length = 1571
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 219 NAREAVRHFGPAPGAPRSHTKPYVRTKGHEKARP 118
+ R + RH G PG R KP+ R G +ARP
Sbjct: 1295 HGRHSGRHTGEEPG--RRAAKPHARDLGRHEARP 1326
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,030,052
Number of Sequences: 237096
Number of extensions: 1003471
Number of successful extensions: 2431
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2431
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2363825726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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